Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000277A_C01 KMC000277A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK54449.1| nuclear receptor FF1aE [Danio rerio] 33 2.5
ref|NP_571538.1| nuclear receptor subfamily 5, group A, member 2... 33 2.5
sp|Q00899|TYY1_MOUSE Transcriptional repressor protein YY1 (Yin ... 33 3.3
ref|NP_033563.1| YY1 transcription factor; UCRBP transcription f... 33 3.3
ref|NP_004377.1| chondroitin sulfate proteoglycan 3 (neurocan) [... 33 4.3
>gb|AAK54449.1| nuclear receptor FF1aE [Danio rerio]
Length = 517
Score = 33.5 bits (75), Expect = 2.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 479 IIHLHFVFVGMLWELHHQYHHYHHHYKSLLLAMDP 375
I ++H G+ HH +HH+HHH+ S + P
Sbjct: 173 IQNIHSASKGLPLSHHHHHHHHHHHHSSSSAGLPP 207
>ref|NP_571538.1| nuclear receptor subfamily 5, group A, member 2; fushi tarazu
[Danio rerio] gi|2429328|gb|AAC60274.1| FTZ-F1 homolog
[Danio rerio]
Length = 516
Score = 33.5 bits (75), Expect = 2.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 479 IIHLHFVFVGMLWELHHQYHHYHHHYKSLLLAMDP 375
I ++H G+ HH +HH+HHH+ S + P
Sbjct: 173 IQNIHSASKGLPLSHHHHHHHHHHHHSSSSAGLPP 207
>sp|Q00899|TYY1_MOUSE Transcriptional repressor protein YY1 (Yin and yang 1) (YY-1)
(Delta transcription factor) (NF-E1) (UCR-motif
DNA-binding protein) gi|2137259|pir||A48273
delta/YY1/NF-E1/UCRBP transcription factor - mouse
gi|202271|gb|AAA40522.1| UCR-motif DNA binding protein
gi|293849|gb|AAA40477.1| delta/YY1/NF-E1/UCRBP
transcription factor
Length = 414
Score = 33.1 bits (74), Expect = 3.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 434 HHQYHHYHHHYKSLLLAMDP 375
HH +HH+HHH+ ++A+ P
Sbjct: 71 HHHHHHHHHHHHPPMIALQP 90
>ref|NP_033563.1| YY1 transcription factor; UCRBP transcription factor; delta
transcription factor [Mus musculus]
gi|192941|gb|AAA37521.1| delta-transcription factor
Length = 414
Score = 33.1 bits (74), Expect = 3.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 434 HHQYHHYHHHYKSLLLAMDP 375
HH +HH+HHH+ ++A+ P
Sbjct: 71 HHHHHHHHHHHHPPMIALQP 90
>ref|NP_004377.1| chondroitin sulfate proteoglycan 3 (neurocan) [Homo sapiens]
gi|27923828|sp|O14594|PGCN_HUMAN Neurocan core protein
precursor (Chondroitin sulfate proteoglycan 3)
gi|2739089|gb|AAC80576.1| neurocan [Homo sapiens]
Length = 1321
Score = 32.7 bits (73), Expect = 4.3
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = -1
Query: 434 HHQYHHYHHHYKS 396
HHQ+HH HHH+KS
Sbjct: 1286 HHQHHHQHHHHKS 1298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,897,266
Number of Sequences: 1393205
Number of extensions: 10539937
Number of successful extensions: 34670
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30600
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
