Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000276A_C01 KMC000276A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568912.1| putative protein; protein id: At5g59710.1, supp... 82 2e-15
pir||B86212 protein F24B9.20 [imported] - Arabidopsis thaliana g... 76 2e-13
ref|XP_216889.1| similar to CCR4-NOT transcription complex, subu... 68 4e-11
gb|AAH43133.1| Unknown (protein for IMAGE:6811456) [Mus musculus] 68 4e-11
dbj|BAC37134.1| unnamed protein product [Mus musculus] 68 4e-11
>ref|NP_568912.1| putative protein; protein id: At5g59710.1, supported by cDNA:
gi_12006938 [Arabidopsis thaliana]
gi|12006939|gb|AAG44978.1|AF295433_1 VIP2 protein
[Arabidopsis thaliana]
Length = 556
Score = 82.4 bits (202), Expect = 2e-15
Identities = 36/63 (57%), Positives = 49/63 (77%)
Frame = -3
Query: 476 GWFYHQELRLWLIRVPHIEPLVKTNTHERGSYHCFEPNTFEIIRKDNFVLPYELLEKRPH 297
GWFYH+ELR+W RV EPLV+ T+ERG+Y +PN+F+ +RK++FV+ YEL+EKRP
Sbjct: 495 GWFYHKELRVWFFRVG--EPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPS 552
Query: 296 LPQ 288
L Q
Sbjct: 553 LLQ 555
>pir||B86212 protein F24B9.20 [imported] - Arabidopsis thaliana
gi|8439898|gb|AAF75084.1|AC007583_20 F24B9.20
[Arabidopsis thaliana]
Length = 595
Score = 76.3 bits (186), Expect = 2e-13
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = -3
Query: 476 GWFYHQELRLWLIRVPHIEPLVKTNTHERGSYHCFEPNTFEIIRK 342
GWFYH+E RLW IR+ EPLVKTN +ERGSYHCF+PN+FEI++K
Sbjct: 537 GWFYHKEHRLWFIRIG--EPLVKTNAYERGSYHCFDPNSFEIVQK 579
>ref|XP_216889.1| similar to CCR4-NOT transcription complex, subunit 2; RIKEN cDNA
2600016M12 gene [Mus musculus] [Rattus norvegicus]
Length = 407
Score = 68.2 bits (165), Expect = 4e-11
Identities = 30/61 (49%), Positives = 44/61 (71%)
Frame = -3
Query: 473 WFYHQELRLWLIRVPHIEPLVKTNTHERGSYHCFEPNTFEIIRKDNFVLPYELLEKRPHL 294
W YH+E R+W+ R P +EP +KTNT+ERG+Y+ F+ + + K+ F L Y+ LE+RPHL
Sbjct: 336 WRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHL 394
Query: 293 P 291
P
Sbjct: 395 P 395
>gb|AAH43133.1| Unknown (protein for IMAGE:6811456) [Mus musculus]
Length = 558
Score = 68.2 bits (165), Expect = 4e-11
Identities = 30/61 (49%), Positives = 44/61 (71%)
Frame = -3
Query: 473 WFYHQELRLWLIRVPHIEPLVKTNTHERGSYHCFEPNTFEIIRKDNFVLPYELLEKRPHL 294
W YH+E R+W+ R P +EP +KTNT+ERG+Y+ F+ + + K+ F L Y+ LE+RPHL
Sbjct: 487 WRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHL 545
Query: 293 P 291
P
Sbjct: 546 P 546
>dbj|BAC37134.1| unnamed protein product [Mus musculus]
Length = 540
Score = 68.2 bits (165), Expect = 4e-11
Identities = 30/61 (49%), Positives = 44/61 (71%)
Frame = -3
Query: 473 WFYHQELRLWLIRVPHIEPLVKTNTHERGSYHCFEPNTFEIIRKDNFVLPYELLEKRPHL 294
W YH+E R+W+ R P +EP +KTNT+ERG+Y+ F+ + + K+ F L Y+ LE+RPHL
Sbjct: 469 WRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHL 527
Query: 293 P 291
P
Sbjct: 528 P 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,738,654
Number of Sequences: 1393205
Number of extensions: 8747817
Number of successful extensions: 17946
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17934
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
