Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000275A_C01 KMC000275A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196946.1| putative protein; protein id: At5g14420.1, supp... 37 1e-06
ref|NP_186814.1| unknown protein; protein id: At3g01650.1 [Arabi... 37 7e-06
ref|NP_565206.1| expressed protein; protein id: At1g79380.1, sup... 47 2e-04
ref|NP_564907.1| F12A21.7; protein id: At1g67800.1, supported by... 37 2e-04
gb|AAL92171.1|AF488809_1 inhibitor of apotosis protein 1-like pr... 33 0.003
>ref|NP_196946.1| putative protein; protein id: At5g14420.1, supported by cDNA:
gi_20466261 [Arabidopsis thaliana]
gi|11357547|pir||T48615 hypothetical protein F18O22.210
- Arabidopsis thaliana gi|7573467|emb|CAB87781.1|
putative protein [Arabidopsis thaliana]
gi|20466262|gb|AAM20448.1| putative protein [Arabidopsis
thaliana] gi|23198082|gb|AAN15568.1| putative protein
[Arabidopsis thaliana]
Length = 468
Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 302 QTCRDCGSKLSKCPICREQITNHIKLF 222
QTC +CG L CPICR I IKL+
Sbjct: 442 QTCCECGPDLQMCPICRAPIQTRIKLY 468
Score = 36.2 bits (82), Expect(2) = 1e-06
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = -1
Query: 445 CTICLTNEQDMAFGCGH 395
C ICL+N +DMAFGCGH
Sbjct: 425 CPICLSNPKDMAFGCGH 441
>ref|NP_186814.1| unknown protein; protein id: At3g01650.1 [Arabidopsis thaliana]
gi|6016736|gb|AAF01562.1|AC009325_32 unknown protein
[Arabidopsis thaliana]
Length = 489
Score = 37.0 bits (84), Expect(2) = 7e-06
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 302 QTCRDCGSKLSKCPICREQITNHIKLF 222
QTC +CG L CPICR I IKL+
Sbjct: 463 QTCCECGPDLKVCPICRAPIQTRIKLY 489
Score = 34.3 bits (77), Expect(2) = 7e-06
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = -1
Query: 445 CTICLTNEQDMAFGCGH 395
C ICL+N ++MAFGCGH
Sbjct: 446 CPICLSNPKNMAFGCGH 462
>ref|NP_565206.1| expressed protein; protein id: At1g79380.1, supported by cDNA:
gi_13937148 [Arabidopsis thaliana]
gi|25406578|pir||G96824 hypothetical protein T8K14.20
[imported] - Arabidopsis thaliana
gi|4835771|gb|AAD30238.1|AC007202_20 Similar to
gi|3844599 F31D5.2 gene product from Caenorhabditis
elegans cosmid gb|U28941 and contains PF|00097 Zinc
(Ring) finger C3HC4 domain. ESTs gb|F19963 and
gb|T42582 come from this gene. [Arabidopsis thaliana]
gi|13937149|gb|AAK50068.1|AF372928_1 At1g79380/T8K14_20
[Arabidopsis thaliana] gi|22137140|gb|AAM91415.1|
At1g79380/T8K14_20 [Arabidopsis thaliana]
Length = 401
Score = 47.0 bits (110), Expect = 2e-04
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -3
Query: 299 TCRDCGSKLSKCPICREQITNHIKLF 222
TC DCGSK+S CPICR +ITN +KL+
Sbjct: 375 TCGDCGSKISNCPICRVRITNRLKLY 400
Score = 37.4 bits (85), Expect = 0.14
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 448 ACTICLTNEQDMAFGCGHMVSSSKQIMFSFCLI 350
+C ICLTN +D+AF CGHM S C I
Sbjct: 356 SCPICLTNRKDVAFSCGHMTCGDCGSKISNCPI 388
>ref|NP_564907.1| F12A21.7; protein id: At1g67800.1, supported by cDNA: 34552.
[Arabidopsis thaliana] gi|21592955|gb|AAM64905.1|
unknown [Arabidopsis thaliana]
Length = 433
Score = 37.0 bits (84), Expect(2) = 2e-04
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -3
Query: 302 QTCRDCGSKLSKCPICREQITNHIKLF 222
QTC CG L CPICR I+ IKL+
Sbjct: 407 QTCAGCGEDLHVCPICRSSISVRIKLY 433
Score = 29.3 bits (64), Expect(2) = 2e-04
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = -1
Query: 445 CTICLTNEQDMAFGCGH 395
C +CL + ++MAF CGH
Sbjct: 390 CPVCLVSAKNMAFNCGH 406
>gb|AAL92171.1|AF488809_1 inhibitor of apotosis protein 1-like protein [Aedes albopictus]
Length = 402
Score = 33.5 bits (75), Expect(2) = 0.003
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 296 CRDCGSKLSKCPICREQITNHIKLF 222
C C S ++KCP+CR+ TN ++++
Sbjct: 376 CAKCASSVTKCPLCRKPFTNVMRIY 400
Score = 28.9 bits (63), Expect(2) = 0.003
Identities = 14/36 (38%), Positives = 19/36 (51%), Gaps = 1/36 (2%)
Frame = -1
Query: 481 DKPEMISYEM*ACTICLTNEQDMAFG-CGHMVSSSK 377
D+P C IC NE + AF CGH+V+ +K
Sbjct: 343 DEPNRKQDTSRTCKICYVNEYNTAFSPCGHVVACAK 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,163,018
Number of Sequences: 1393205
Number of extensions: 10034533
Number of successful extensions: 21011
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 20368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21004
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
