Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000274A_C02 KMC000274A_c02
(672 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF73054.1|AF263518_1 protein synthesis initiation factor 4G;... 127 1e-28
ref|NP_567095.1| protein synthesis initiation factor - like; pro... 127 1e-28
pir||T49219 translation initiation factor eIF-4 gamma homolog F2... 110 1e-23
gb|AAF73056.1|AF263834_1 protein synthesis initiation factor 4G;... 105 6e-22
dbj|BAA23709.1| KIAA0436 [Homo sapiens] 33 2.7
>gb|AAF73054.1|AF263518_1 protein synthesis initiation factor 4G; EIF4G [Arabidopsis thaliana]
Length = 1401
Score = 127 bits (319), Expect = 1e-28
Identities = 65/104 (62%), Positives = 78/104 (74%)
Frame = -1
Query: 672 LRTLEDAVNDAPKAPEFLGRIFAKVITESVVSLNEIGQLIHDGGEEPESLLQVGLAADVL 493
L+TLEDAVNDAPKA EFLGRIF K +TE VV+L EIG+LI +GGEEP SL++ GL DVL
Sbjct: 1297 LKTLEDAVNDAPKAAEFLGRIFGKSVTEKVVTLTEIGRLIQEGGEEPGSLIEFGLGGDVL 1356
Query: 492 GSTLEAIRLEKGDAVLSEIRTSSNLQLETFRPPKPITSRKLEAF 361
GS LE I+ E G+ L EIR SS L++E F+P P S+ LE F
Sbjct: 1357 GSVLEMIKTEAGEETLVEIRRSSGLRIENFKPHAPNRSKILEKF 1400
>ref|NP_567095.1| protein synthesis initiation factor - like; protein id: At3g60240.1
[Arabidopsis thaliana]
Length = 1544
Score = 127 bits (319), Expect = 1e-28
Identities = 65/104 (62%), Positives = 78/104 (74%)
Frame = -1
Query: 672 LRTLEDAVNDAPKAPEFLGRIFAKVITESVVSLNEIGQLIHDGGEEPESLLQVGLAADVL 493
L+TLEDAVNDAPKA EFLGRIF K +TE VV+L EIG+LI +GGEEP SL++ GL DVL
Sbjct: 1440 LKTLEDAVNDAPKAAEFLGRIFGKSVTEKVVTLTEIGRLIQEGGEEPGSLIEFGLGGDVL 1499
Query: 492 GSTLEAIRLEKGDAVLSEIRTSSNLQLETFRPPKPITSRKLEAF 361
GS LE I+ E G+ L EIR SS L++E F+P P S+ LE F
Sbjct: 1500 GSVLEMIKTEAGEETLVEIRRSSGLRIENFKPHAPNRSKILEKF 1543
>pir||T49219 translation initiation factor eIF-4 gamma homolog F27H5.30
[similarity] - Arabidopsis thaliana
gi|7576200|emb|CAB87861.1| protein synthesis initiation
factor-like [Arabidopsis thaliana]
Length = 1606
Score = 110 bits (276), Expect = 1e-23
Identities = 57/88 (64%), Positives = 67/88 (75%)
Frame = -1
Query: 672 LRTLEDAVNDAPKAPEFLGRIFAKVITESVVSLNEIGQLIHDGGEEPESLLQVGLAADVL 493
L+TLEDAVNDAPKA EFLGRIF K +TE VV+L EIG+LI +GGEEP SL++ GL DVL
Sbjct: 1440 LKTLEDAVNDAPKAAEFLGRIFGKSVTEKVVTLTEIGRLIQEGGEEPGSLIEFGLGGDVL 1499
Query: 492 GSTLEAIRLEKGDAVLSEIRTSSNLQLE 409
GS LE I+ E G+ L EIR SS + E
Sbjct: 1500 GSVLEMIKTEAGEETLVEIRRSSGEENE 1527
>gb|AAF73056.1|AF263834_1 protein synthesis initiation factor 4G; EIF4G [Arabidopsis
thaliana]
Length = 93
Score = 105 bits (262), Expect = 6e-22
Identities = 54/92 (58%), Positives = 66/92 (71%)
Frame = -1
Query: 636 KAPEFLGRIFAKVITESVVSLNEIGQLIHDGGEEPESLLQVGLAADVLGSTLEAIRLEKG 457
KA EFLGRIF K +TE VV+L EIG+LI +GGEEP SL++ GL DVLGS LE I+ E G
Sbjct: 1 KAAEFLGRIFGKSVTEKVVTLTEIGRLIQEGGEEPGSLIEFGLGGDVLGSVLEMIKTEAG 60
Query: 456 DAVLSEIRTSSNLQLETFRPPKPITSRKLEAF 361
+ L EIR SS L++E F+P P S+ LE F
Sbjct: 61 EETLVEIRRSSGLRIENFKPHAPNRSKILEKF 92
>dbj|BAA23709.1| KIAA0436 [Homo sapiens]
Length = 689
Score = 33.5 bits (75), Expect = 2.7
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 503 AASPTCKRLSGSSPPSCINWPISFKETTLSVITLAKIRPRNSGAFGASLTASSNVR 670
A TC L S P+C++W +S LS+ L ++ N ++ A VR
Sbjct: 4 ACGDTCSPLRASGSPACLHWFVSRAGLILSICDLQPVKQENEKPLPENMDAFEKVR 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,475,479
Number of Sequences: 1393205
Number of extensions: 10688762
Number of successful extensions: 26381
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26376
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
