Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000272A_C01 KMC000272A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG13441.1|AC051634_22 putative Ste20-related protein kinase ... 57 2e-07
gb|AAO17022.1| Putative Ste20-related protein kinase [Oryza sati... 50 1e-05
ref|NP_194141.2| putative protein; protein id: At4g24100.1, supp... 42 0.005
gb|EAA39691.1| GLP_741_25710_4783 [Giardia lamblia ATCC 50803] 37 0.17
sp|Q25092|LMB_HIRME Laminin B-chain gi|974619|gb|AAC46862.1| lam... 37 0.22
>gb|AAG13441.1|AC051634_22 putative Ste20-related protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 643
Score = 57.0 bits (136), Expect = 2e-07
Identities = 28/41 (68%), Positives = 35/41 (85%)
Frame = -2
Query: 560 LLVKISELQSRMINLTEELTSEKVKHKQLQQQLAAIYSQEQ 438
LLVKISELQSRMI LT+EL + K+KH QLQQ+L A+Y +E+
Sbjct: 591 LLVKISELQSRMITLTDELIAAKLKHVQLQQELNALYCREE 631
>gb|AAO17022.1| Putative Ste20-related protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 645
Score = 50.4 bits (119), Expect = 1e-05
Identities = 24/41 (58%), Positives = 33/41 (79%)
Frame = -2
Query: 560 LLVKISELQSRMINLTEELTSEKVKHKQLQQQLAAIYSQEQ 438
LLVKI ELQSRMI+LT+EL + K++H QLQ++L +Y E+
Sbjct: 595 LLVKIFELQSRMISLTDELITTKLQHVQLQEELKILYCHEE 635
>ref|NP_194141.2| putative protein; protein id: At4g24100.1, supported by cDNA:
gi_20268685 [Arabidopsis thaliana]
gi|20268686|gb|AAM14047.1| unknown protein [Arabidopsis
thaliana] gi|22136716|gb|AAM91677.1| unknown protein
[Arabidopsis thaliana]
Length = 709
Score = 42.0 bits (97), Expect = 0.005
Identities = 22/41 (53%), Positives = 30/41 (72%)
Frame = -2
Query: 563 LLLVKISELQSRMINLTEELTSEKVKHKQLQQQLAAIYSQE 441
LLL IS+L++R+ +LTEEL EK K+ QLQQ+L A +E
Sbjct: 668 LLLSSISDLRARLDDLTEELDIEKSKYSQLQQKLKAFTGRE 708
>gb|EAA39691.1| GLP_741_25710_4783 [Giardia lamblia ATCC 50803]
Length = 6975
Score = 37.0 bits (84), Expect = 0.17
Identities = 27/81 (33%), Positives = 39/81 (47%), Gaps = 9/81 (11%)
Frame = +1
Query: 274 MILYQRPS--TSKKQFSFSKEKNGVHGIICRSP---GSAFTSLCMIIIISAHATSS---L 429
M++ PS T +++ + VHG+I + G TS+C+ I+ A T S
Sbjct: 5866 MVVKHIPSMVTEERRMRQMHNLSYVHGVIVAATVYFGIGLTSICIDILSKASGTCSSEEC 5925
Query: 430 VPFCSWL*IAASCCCN-CLCF 489
FCS L + CCN CLCF
Sbjct: 5926 CAFCSILDLPLCSCCNCCLCF 5946
>sp|Q25092|LMB_HIRME Laminin B-chain gi|974619|gb|AAC46862.1| laminin B-chain [Hirudo
medicinalis]
Length = 400
Score = 36.6 bits (83), Expect = 0.22
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 554 VKISELQSRMINLTEELTSEKVKHKQLQQQLAAIYSQEQNGTREEVA*ALI 402
VKISEL SR++NL E K K+L++ I Q+ +G + +L+
Sbjct: 199 VKISELYSRVLNLQSEFNKSSAKTKELRENALEIQEQDVSGAYASIQESLV 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,202,440
Number of Sequences: 1393205
Number of extensions: 8844111
Number of successful extensions: 23678
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23621
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
