Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000270A_C01 KMC000270A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB88621.1| putative DNA helicase [Spodoptera exigua nucleopo... 38 0.11
ref|NP_037830.1| ORF70 helicase [Spodoptera exigua nucleopolyhed... 38 0.11
dbj|BAC15815.1| contains ESTs AU077704(E50915),AU077703(E50915)~... 37 0.25
dbj|BAC15819.1| contains ESTs AU077703(E50915),AU077704(E50915)~... 37 0.25
gb|AAF01441.1|AF187231_1 signal transducer and activator of tran... 35 0.74
>gb|AAB88621.1| putative DNA helicase [Spodoptera exigua nucleopolyhedrovirus]
Length = 1222
Score = 37.7 bits (86), Expect = 0.11
Identities = 22/86 (25%), Positives = 46/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TLNNIFRTIWIYTHN--ILLYVHKT*RCPSSLLENIAKHIKQGNPIL*H*QRLAQSEIVE 429
TLN++FR IW Y HN I++ V+ + S L+ N+ H + + + ++ + + +E
Sbjct: 617 TLNDLFREIWNYGHNELIIIGVYLNDKKMSDLIMNLKCHECKESQYMRRNKKCSCLDKLE 676
Query: 430 ISILVQA*TFSNSLCNSCKDIFSWLW 507
I++ + L ++CK++ +W
Sbjct: 677 INVKAFKVVLAMELFSNCKEMLELIW 702
>ref|NP_037830.1| ORF70 helicase [Spodoptera exigua nucleopolyhedrovirus]
gi|2394409|gb|AAB96630.1| ORF70 helicase [Spodoptera
exigua nucleopolyhedrovirus]
Length = 1222
Score = 37.7 bits (86), Expect = 0.11
Identities = 22/86 (25%), Positives = 46/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TLNNIFRTIWIYTHN--ILLYVHKT*RCPSSLLENIAKHIKQGNPIL*H*QRLAQSEIVE 429
TLN++FR IW Y HN I++ V+ + S L+ N+ H + + + ++ + + +E
Sbjct: 617 TLNDLFREIWNYGHNELIIIGVYLNDKKMSDLIMNLKCHECKESQYMRRNKKCSCLDKLE 676
Query: 430 ISILVQA*TFSNSLCNSCKDIFSWLW 507
I++ + L ++CK++ +W
Sbjct: 677 INVKAFKVVLAMELFSNCKEMLELIW 702
>dbj|BAC15815.1| contains ESTs AU077704(E50915),AU077703(E50915)~proline-rich
protein,cell wall-protein like [Oryza sativa (japonica
cultivar-group)]
Length = 247
Score = 36.6 bits (83), Expect = 0.25
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -1
Query: 588 EPSANEKMEPSSEVNMQPSPDLKMEPSPKP 499
EPS N K EP E +PSP+ K P+PKP
Sbjct: 183 EPSPNPKPEPKPEPKPEPSPNPKPNPNPKP 212
Score = 33.1 bits (74), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 588 EPSANEKMEPSSEVNMQPSPDLKMEPSPKPTKN 490
+P N K +P E + P P+ K EP P+P+ N
Sbjct: 171 DPKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPN 203
>dbj|BAC15819.1| contains ESTs AU077703(E50915),AU077704(E50915)~proline-rich
protein,cell wall-protein like [Oryza sativa (japonica
cultivar-group)]
Length = 247
Score = 36.6 bits (83), Expect = 0.25
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -1
Query: 588 EPSANEKMEPSSEVNMQPSPDLKMEPSPKP 499
EPS N K EP E +PSP+ K P+PKP
Sbjct: 183 EPSPNPKPEPKPEPKPEPSPNPKPNPNPKP 212
Score = 33.1 bits (74), Expect = 2.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 588 EPSANEKMEPSSEVNMQPSPDLKMEPSPKPTKN 490
+P N K +P E + P P+ K EP P+P+ N
Sbjct: 171 DPKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPN 203
>gb|AAF01441.1|AF187231_1 signal transducer and activator of transcription 2 [Mus musculus]
Length = 925
Score = 35.0 bits (79), Expect = 0.74
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Frame = -1
Query: 600 EVEFEPSANEKMEPSSEVNMQPSPDLKMEPSP----KPTKNIFTRIAKRI 463
+V+ EP+ +EP+ +V ++P+P + +EP+P +P + +A ++
Sbjct: 781 QVQLEPAPQVLLEPAPQVQLEPAPQVLLEPAPQVQLEPAPQVLLELAPQV 830
Score = 34.3 bits (77), Expect = 1.3
Identities = 11/33 (33%), Positives = 24/33 (72%)
Frame = -1
Query: 600 EVEFEPSANEKMEPSSEVNMQPSPDLKMEPSPK 502
+V+ EP+ +EP+ +V ++P+P + +EP+P+
Sbjct: 765 QVQLEPAPQVLLEPAPQVQLEPAPQVLLEPAPQ 797
Score = 33.5 bits (75), Expect = 2.1
Identities = 11/33 (33%), Positives = 25/33 (75%)
Frame = -1
Query: 600 EVEFEPSANEKMEPSSEVNMQPSPDLKMEPSPK 502
+V EP+ ++EP+ +V ++P+P +++EP+P+
Sbjct: 773 QVLLEPAPQVQLEPAPQVLLEPAPQVQLEPAPQ 805
Score = 33.5 bits (75), Expect = 2.1
Identities = 11/33 (33%), Positives = 25/33 (75%)
Frame = -1
Query: 600 EVEFEPSANEKMEPSSEVNMQPSPDLKMEPSPK 502
+V EP+ ++EP+ +V ++P+P +++EP+P+
Sbjct: 757 QVLLEPAPQVQLEPAPQVLLEPAPQVQLEPAPQ 789
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,865,992
Number of Sequences: 1393205
Number of extensions: 10928129
Number of successful extensions: 31973
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 24924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30359
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
