Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000269A_C01 KMC000269A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186989.1| unknown protein; protein id: At3g03390.1 [Arabi... 118 5e-26
gb|AAL84951.1| AT3g03380/T21P5_20 [Arabidopsis thaliana] gi|2736... 118 5e-26
ref|NP_014276.1| Hypothetical ORF; Ynl123wp [Saccharomyces cerev... 40 0.028
pir||T43318 YNL123w protein homolog - fission yeast (Schizosacch... 35 0.52
gb|EAA32963.1| hypothetical protein [Neurospora crassa] 35 0.52
>ref|NP_186989.1| unknown protein; protein id: At3g03390.1 [Arabidopsis thaliana]
gi|6017110|gb|AAF01593.1|AC009895_14 unknown protein
[Arabidopsis thaliana]
Length = 443
Score = 118 bits (296), Expect = 5e-26
Identities = 51/62 (82%), Positives = 58/62 (93%)
Frame = -3
Query: 580 IDAFVAVTKELEHGEFVRIRTIHLNGKPRVLTLKQDLHYWPTWELRFDPDTAIWRRKIIK 401
++AF TKELEHG+FVRIRT+HLNGKPRVLTLKQDLHYWPTWELRFDP+TA+WRR I+K
Sbjct: 381 LNAFADATKELEHGQFVRIRTVHLNGKPRVLTLKQDLHYWPTWELRFDPETALWRRNILK 440
Query: 400 AL 395
AL
Sbjct: 441 AL 442
>gb|AAL84951.1| AT3g03380/T21P5_20 [Arabidopsis thaliana] gi|27363448|gb|AAO11643.1|
At3g03380/T21P5_20 [Arabidopsis thaliana]
Length = 1097
Score = 118 bits (296), Expect = 5e-26
Identities = 51/62 (82%), Positives = 58/62 (93%)
Frame = -3
Query: 580 IDAFVAVTKELEHGEFVRIRTIHLNGKPRVLTLKQDLHYWPTWELRFDPDTAIWRRKIIK 401
++AF TKELEHG+FVRIRT+HLNGKPRVLTLKQDLHYWPTWELRFDP+TA+WRR I+K
Sbjct: 1035 LNAFADATKELEHGQFVRIRTVHLNGKPRVLTLKQDLHYWPTWELRFDPETALWRRNILK 1094
Query: 400 AL 395
AL
Sbjct: 1095 AL 1096
>ref|NP_014276.1| Hypothetical ORF; Ynl123wp [Saccharomyces cerevisiae]
gi|1730771|sp|P53920|YNM3_YEAST Hypothetical 110.9 kDa
protein in SPC98-TOM70 intergenic region
gi|2132752|pir||S63064 probable signaling-associated PDZ
domain containing membrane protein YNL123w - yeast
(Saccharomyces cerevisiae) gi|1183950|emb|CAA93384.1|
N1897 [Saccharomyces cerevisiae]
gi|1302054|emb|CAA96004.1| ORF YNL123w [Saccharomyces
cerevisiae]
Length = 997
Score = 39.7 bits (91), Expect = 0.028
Identities = 18/57 (31%), Positives = 31/57 (53%)
Frame = -3
Query: 580 IDAFVAVTKELEHGEFVRIRTIHLNGKPRVLTLKQDLHYWPTWELRFDPDTAIWRRK 410
+D F+ V K + + ++R + + P ++LK + HY+PT EL+ D T W K
Sbjct: 931 LDTFLKVVKTIPDNSYCKMRLMTFDNVPFAISLKTNYHYFPTAELKRDNITHKWIEK 987
>pir||T43318 YNL123w protein homolog - fission yeast (Schizosaccharomyces pombe)
(fragment) gi|2865169|dbj|BAA24801.1| YNL123w homolog
[Schizosaccharomyces pombe]
Length = 391
Score = 35.4 bits (80), Expect = 0.52
Identities = 15/45 (33%), Positives = 28/45 (61%)
Frame = -3
Query: 580 IDAFVAVTKELEHGEFVRIRTIHLNGKPRVLTLKQDLHYWPTWEL 446
++ FV ++++ +VR+ T + P VLT+K + HY+PT +L
Sbjct: 301 LEDFVREIRKIDDNSYVRVSTSTFDKVPVVLTIKMNKHYFPTIDL 345
>gb|EAA32963.1| hypothetical protein [Neurospora crassa]
Length = 1026
Score = 35.4 bits (80), Expect = 0.52
Identities = 17/58 (29%), Positives = 32/58 (54%), Gaps = 2/58 (3%)
Frame = -3
Query: 580 IDAFVAVTKELEHGEFVRIRTIHLNGKPRVLTLKQDLHYWPTWELRFDPDTAI--WRR 413
+ +F+ + + R++ + + P V+T+K++ HY+PT EL DP + WRR
Sbjct: 931 LKSFLDAVVGIPDNTYFRLKCMTFDSVPWVVTMKKNEHYFPTTELIKDPSEPLTGWRR 988
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,863,459
Number of Sequences: 1393205
Number of extensions: 10957689
Number of successful extensions: 25886
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 24833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25711
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
