Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000267A_C01 KMC000267A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194874.1| putative protein; protein id: At4g31460.1, supp... 41 0.006
dbj|BAC02896.1| tobacco nucleolin [Nicotiana tabacum] 33 1.3
dbj|BAA82445.1| ecpp44 [Daucus carota] 32 3.0
gb|AAC52631.1| notch4 intracellular domain; expressed only in tu... 32 3.0
pir||T09059 notch4 - mouse gi|2564947|gb|AAB82004.1| notch4 [Mus... 32 3.0
>ref|NP_194874.1| putative protein; protein id: At4g31460.1, supported by cDNA:
38533., supported by cDNA: gi_15724233 [Arabidopsis
thaliana] gi|7486382|pir||T10676 hypothetical protein
F3L17.30 - Arabidopsis thaliana
gi|5262757|emb|CAB45905.1| putative protein [Arabidopsis
thaliana] gi|7270049|emb|CAB79864.1| putative protein
[Arabidopsis thaliana]
gi|15724234|gb|AAL06510.1|AF412057_1 AT4g31460/F3L17_30
[Arabidopsis thaliana] gi|21593391|gb|AAM65340.1|
unknown [Arabidopsis thaliana]
Length = 212
Score = 41.2 bits (95), Expect = 0.006
Identities = 24/65 (36%), Positives = 35/65 (52%), Gaps = 1/65 (1%)
Frame = -3
Query: 492 PEDEANFEQSFKDLKLSEREARQEIRKIMYAGMGKPQLIGVERKGDQSIE-EGGTKNEEE 316
PEDEA EQ FKDL +++++AR+E R+ + G KGD+ EGG +E
Sbjct: 148 PEDEAKLEQGFKDLNIAKKDARREARRTF-------RKKGGGNKGDEEASIEGGGGSESH 200
Query: 315 TSHDS 301
D+
Sbjct: 201 QEDDN 205
>dbj|BAC02896.1| tobacco nucleolin [Nicotiana tabacum]
Length = 620
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/79 (32%), Positives = 36/79 (44%), Gaps = 5/79 (6%)
Frame = -3
Query: 459 KDLKLSEREARQEIRKIMYAGMGKPQLI---GVERKGDQSIEEGGTKNEEETSHDSTKR- 292
K LK +REA +EI KIM A K + VE+K + + K E +S DS++
Sbjct: 21 KPLKKGKREAGEEIEKIMSAKKQKKDMAVAQAVEKKKSDTKTQKKKKQESSSSDDSSESE 80
Query: 291 -VVPVSYVLAPDKLKIGSY 238
P V P K+ Y
Sbjct: 81 DEKPTKAVAPPKKVAPAKY 99
>dbj|BAA82445.1| ecpp44 [Daucus carota]
Length = 258
Score = 32.3 bits (72), Expect = 3.0
Identities = 21/86 (24%), Positives = 33/86 (37%), Gaps = 12/86 (13%)
Frame = -3
Query: 471 EQSFKDLKLSEREARQEIRKIMYAGMGKPQLIGVERKGDQSIEEGGTKN----------- 325
E ++D K+ E E + + + + + D+ +EEGG K
Sbjct: 54 EPKYEDCKVVEEEEEKAAKPSLLEKLHRSGSSSSSSSSDEEVEEGGEKKKKKEKKGLKEK 113
Query: 324 -EEETSHDSTKRVVPVSYVLAPDKLK 250
EE+ H VPV V P+K K
Sbjct: 114 IEEKIHHKEEDTSVPVEVVTEPEKKK 139
>gb|AAC52631.1| notch4 intracellular domain; expressed only in tumors due to viral
insertion; similar to mouse int-3, GenBank Accession
Number M80456
Length = 554
Score = 32.3 bits (72), Expect = 3.0
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 299 VESCEVSSSFLVPPSSID*SPLRSTP-ISWGLPI 397
+E+C + S +PP S+ SP R +P ++WGLP+
Sbjct: 507 LEACGSACSAPIPPPSLTPSPERGSPQVAWGLPV 540
>pir||T09059 notch4 - mouse gi|2564947|gb|AAB82004.1| notch4 [Mus musculus]
Length = 1964
Score = 32.3 bits (72), Expect = 3.0
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 299 VESCEVSSSFLVPPSSID*SPLRSTP-ISWGLPI 397
+E+C + S +PP S+ SP R +P ++WGLP+
Sbjct: 1917 LEACGSACSAPIPPPSLTPSPERGSPQVAWGLPV 1950
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,121,373
Number of Sequences: 1393205
Number of extensions: 7887597
Number of successful extensions: 16370
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16348
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
