Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000266A_C01 KMC000266A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T49187 hypothetical protein MAA21.90 - Arabidopsis thaliana... 39 0.027
ref|NP_191905.2| conserved hypothetical protein; protein id: At3... 39 0.027
dbj|BAC16134.1| putative Sec31p [Oryza sativa (japonica cultivar... 39 0.035
dbj|BAB47154.1| Sec31p [Oryza sativa] 39 0.035
pir||T29095 cardiac muscle factor 1 - chicken gi|1621107|gb|AAB3... 33 1.5
>pir||T49187 hypothetical protein MAA21.90 - Arabidopsis thaliana
gi|7573329|emb|CAB87799.1| putative protein [Arabidopsis
thaliana]
Length = 1097
Score = 39.3 bits (90), Expect = 0.027
Identities = 19/40 (47%), Positives = 26/40 (64%)
Frame = -2
Query: 470 AQKCGAISAAYKRRREIGDKSRRIDSFFAKLNSGDISKIA 351
++ G A ++REI D SR++ + F KLNSGDISK A
Sbjct: 1005 SEALGGARANTTKKREIEDNSRKLGALFVKLNSGDISKNA 1044
Score = 33.9 bits (76), Expect = 1.1
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -3
Query: 496 TFGPHTPQVLKNVEQYQQPT 437
TF P TP LKN +QYQQPT
Sbjct: 869 TFVPSTPPALKNADQYQQPT 888
>ref|NP_191905.2| conserved hypothetical protein; protein id: At3g63460.1, supported by
cDNA: gi_20466471 [Arabidopsis thaliana]
gi|20466472|gb|AAM20553.1| putative protein [Arabidopsis
thaliana]
Length = 1104
Score = 39.3 bits (90), Expect = 0.027
Identities = 19/40 (47%), Positives = 26/40 (64%)
Frame = -2
Query: 470 AQKCGAISAAYKRRREIGDKSRRIDSFFAKLNSGDISKIA 351
++ G A ++REI D SR++ + F KLNSGDISK A
Sbjct: 1012 SEALGGARANTTKKREIEDNSRKLGALFVKLNSGDISKNA 1051
Score = 33.9 bits (76), Expect = 1.1
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -3
Query: 496 TFGPHTPQVLKNVEQYQQPT 437
TF P TP LKN +QYQQPT
Sbjct: 876 TFVPSTPPALKNADQYQQPT 895
>dbj|BAC16134.1| putative Sec31p [Oryza sativa (japonica cultivar-group)]
Length = 1025
Score = 38.9 bits (89), Expect = 0.035
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -2
Query: 455 AISAAYKRRREIGDKSRRIDSFFAKLNSGDIS 360
A+ + ++REI D SR+I + FAKLNSGDIS
Sbjct: 938 AMGGSQVKKREIEDNSRKIGTLFAKLNSGDIS 969
>dbj|BAB47154.1| Sec31p [Oryza sativa]
Length = 1023
Score = 38.9 bits (89), Expect = 0.035
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -2
Query: 455 AISAAYKRRREIGDKSRRIDSFFAKLNSGDIS 360
A+ + ++REI D SR+I + FAKLNSGDIS
Sbjct: 936 AMGGSQVKKREIEDNSRKIGTLFAKLNSGDIS 967
>pir||T29095 cardiac muscle factor 1 - chicken gi|1621107|gb|AAB36881.1| cardiac
muscle factor 1 CMF1 [Gallus gallus]
Length = 1538
Score = 33.5 bits (75), Expect = 1.5
Identities = 24/83 (28%), Positives = 42/83 (49%), Gaps = 13/83 (15%)
Frame = +2
Query: 32 LLDLVK-------NKYTYDGRLNNMIYIIQLFDD*INTYRTSV-IQYSLKTEG-----NI 172
+LD VK +KY +GR+ + + Q+++ I + + IQ ++KTE NI
Sbjct: 256 ILDSVKELRSSTPSKYNPEGRIKELEMLCQIYEKVIKVLQNQLHIQENMKTEEIQEMKNI 315
Query: 173 NLSEHRGSSRIKSFPSCKYWLEK 241
LSE R ++++ K W +K
Sbjct: 316 MLSERREIDKLQNLSDKKEWQQK 338
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,401,499
Number of Sequences: 1393205
Number of extensions: 7980253
Number of successful extensions: 18098
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18098
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
