Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000265A_C01 KMC000265A_c01
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB93377.1| kinase-like protein [Oryza sativa (japonica cult... 73 4e-12
gb|EAA09106.1| agCP13978 [Anopheles gambiae str. PEST] 34 1.9
ref|NP_353122.1| AGR_C_131p [Agrobacterium tumefaciens] gi|17934... 34 1.9
ref|XP_147779.1| hypothetical protein XP_147779 [Mus musculus] 33 3.3
ref|NP_179212.1| putative replication protein A1; protein id: At... 33 4.3
>dbj|BAB93377.1| kinase-like protein [Oryza sativa (japonica cultivar-group)]
Length = 800
Score = 72.8 bits (177), Expect = 4e-12
Identities = 35/48 (72%), Positives = 41/48 (84%), Gaps = 1/48 (2%)
Frame = -3
Query: 611 DDPWASIAAPAPTTRAKPL-SAGRGRGAKPAAPKLGAQRINRTSSSGM 471
DD W +IAAP P+T+A+PL S+GRGRG KPA PKLGAQRI RTSS+GM
Sbjct: 753 DDLWGAIAAPPPSTKARPLASSGRGRGTKPAQPKLGAQRIGRTSSTGM 800
>gb|EAA09106.1| agCP13978 [Anopheles gambiae str. PEST]
Length = 875
Score = 33.9 bits (76), Expect = 1.9
Identities = 19/53 (35%), Positives = 29/53 (53%)
Frame = -3
Query: 635 LKSTTTEDDDPWASIAAPAPTTRAKPLSAGRGRGAKPAAPKLGAQRINRTSSS 477
L ++++ P S +P +RA PL+ GRG P P LG+Q NRT+ +
Sbjct: 578 LGGSSSQGHSPPTSNGSPQHYSRASPLNFGRGTQLSP-PPPLGSQHHNRTAGT 629
>ref|NP_353122.1| AGR_C_131p [Agrobacterium tumefaciens] gi|17934006|ref|NP_530796.1|
translation initiation factor IF-2 [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gi|25299473|pir||B97369 translation initiation factor
IF-2 [imported] - Agrobacterium tumefaciens (strain C58,
Cereon) gi|25299474|pir||AB2587 translation initiation
factor IF-2 [imported] - Agrobacterium tumefaciens
(strain C58, Dupont) gi|15154954|gb|AAK85907.1|
AGR_C_131p [Agrobacterium tumefaciens str. C58 (Cereon)]
gi|17738404|gb|AAL41112.1| translation initiation factor
IF-2 [Agrobacterium tumefaciens str. C58 (U.
Washington)]
Length = 913
Score = 33.9 bits (76), Expect = 1.9
Identities = 18/38 (47%), Positives = 21/38 (54%)
Frame = -3
Query: 599 ASIAAPAPTTRAKPLSAGRGRGAKPAAPKLGAQRINRT 486
A+ AAPAP T A+P SA + PA P A R RT
Sbjct: 206 AAAAAPAPRTDARPQSAAAAPRSAPATPDAAAPRGRRT 243
>ref|XP_147779.1| hypothetical protein XP_147779 [Mus musculus]
Length = 102
Score = 33.1 bits (74), Expect = 3.3
Identities = 14/22 (63%), Positives = 17/22 (76%)
Frame = -3
Query: 599 ASIAAPAPTTRAKPLSAGRGRG 534
A +AAPAP R P+SAG+GRG
Sbjct: 29 ARLAAPAPALRGPPVSAGQGRG 50
>ref|NP_179212.1| putative replication protein A1; protein id: At2g16160.1
[Arabidopsis thaliana] gi|25352490|pir||C84537 probable
replication protein A1 [imported] - Arabidopsis thaliana
gi|4678211|gb|AAD26957.1| putative replication protein
A1 [Arabidopsis thaliana]
Length = 217
Score = 32.7 bits (73), Expect = 4.3
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 276 DFP*NKIPFKRILQIKYTNRKHQSNSALDELLYFNMITGHQKKTATYRFNIS 431
D+ K+PFK + + K+ N KHQ++ A + +F +TG Q A + ++
Sbjct: 133 DYRGRKLPFKIMDKQKFFNVKHQNDQAFEFQRFFQRLTGPQNIIALVSWRLT 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,969,960
Number of Sequences: 1393205
Number of extensions: 14005883
Number of successful extensions: 40824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 38592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40735
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
