Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000263A_C02 KMC000263A_c02
(856 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701181.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.49
gb|EAA18809.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium y... 34 2.4
ref|NP_734000.1| movement protein [Cowpea mosaic virus] 34 3.2
ref|NP_613285.1| precursor polypeptide [Cowpea mosaic virus] gi|... 34 3.2
dbj|BAB63682.1| P0518C01.21 [Oryza sativa (japonica cultivar-gro... 33 4.1
>ref|NP_701181.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496246|gb|AAN35905.1|AE014840_53 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 773
Score = 36.6 bits (83), Expect = 0.49
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -1
Query: 223 TLDVLLFLLFLFFIILSLGY*SSKHLFDKPIWKRWNLHSSS*YYNSILKNI 71
T +++++L + +II+ + Y LFD +WKRWN + Y N I+ NI
Sbjct: 518 TCSMIIYILCIIYIIMEITY----LLFDIKMWKRWNNLYTFTYNNDIVMNI 564
>gb|EAA18809.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 973
Score = 34.3 bits (77), Expect = 2.4
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 292 IKKLEERKGKNHLFFFWGCNGRFTLDVLLFLLFLFFIILSLGY*SSKHLFD 140
+K++ GKN+LF F + + L +FF+ L +G SS+ L++
Sbjct: 531 LKRVNSSSGKNYLFIFMPTQNHLKITRIFIFLTIFFLCLRVGLISSRILYE 581
>ref|NP_734000.1| movement protein [Cowpea mosaic virus]
Length = 459
Score = 33.9 bits (76), Expect = 3.2
Identities = 14/47 (29%), Positives = 25/47 (52%)
Frame = -2
Query: 414 CRNSFCTLVFII*HG*SSSLIKFDWFFRRKDVVDKVEKSKG*KSWRK 274
C +C L F + L+ DWF+++ + + E S+G ++WRK
Sbjct: 66 CLTRYCCLYFFL-------LLLADWFYKKSSIFFETEFSRGFRTWRK 105
>ref|NP_613285.1| precursor polypeptide [Cowpea mosaic virus]
gi|138365|sp|P03599|VGNM_CPMV Genome polyprotein M
[Contains: Coat protein VP37; Coat protein VP23]
gi|75638|pir||GNWEC genome polyprotein M - cowpea
aphid-borne mosaic virus gi|58911|emb|CAA25314.1|
precursor polypeptide [Cowpea mosaic virus]
Length = 1046
Score = 33.9 bits (76), Expect = 3.2
Identities = 14/47 (29%), Positives = 25/47 (52%)
Frame = -2
Query: 414 CRNSFCTLVFII*HG*SSSLIKFDWFFRRKDVVDKVEKSKG*KSWRK 274
C +C L F + L+ DWF+++ + + E S+G ++WRK
Sbjct: 66 CLTRYCCLYFFL-------LLLADWFYKKSSIFFETEFSRGFRTWRK 105
>dbj|BAB63682.1| P0518C01.21 [Oryza sativa (japonica cultivar-group)]
Length = 238
Score = 33.5 bits (75), Expect = 4.1
Identities = 25/61 (40%), Positives = 30/61 (48%), Gaps = 10/61 (16%)
Frame = -3
Query: 785 AAVSNSKGSALTTQGLLH-PSQFASMPPSGNQPSI---------CSCWILICSSSAPLQF 636
AA S S SA T GLL PS AS P+ + PS CSC L ++ APL F
Sbjct: 68 AAASASFSSAATASGLLSLPSPPASSFPASSAPSTTVANASCYSCSCPFLFSAAPAPLDF 127
Query: 635 K 633
+
Sbjct: 128 E 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 772,314,404
Number of Sequences: 1393205
Number of extensions: 17792664
Number of successful extensions: 63949
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 60834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63861
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45152354394
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
