Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000262A_C01 KMC000262A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177275.1| unknown protein; protein id: At1g71190.1 [Arabi... 39 0.037
dbj|BAB63619.1| P0483G10.13 [Oryza sativa (japonica cultivar-gro... 35 0.69
gb|EAA24989.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium... 31 10.0
ref|NP_604067.1| Pyruvate-flavodoxin oxidoreductase [Fusobacteri... 31 10.0
>ref|NP_177275.1| unknown protein; protein id: At1g71190.1 [Arabidopsis thaliana]
gi|25358288|pir||F96736 unknown protein F23N20.18
[imported] - Arabidopsis thaliana
gi|12323420|gb|AAG51683.1|AC016972_2 unknown protein;
59738-58353 [Arabidopsis thaliana]
Length = 281
Score = 39.3 bits (90), Expect = 0.037
Identities = 20/37 (54%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +2
Query: 176 TFHMVSSHTLKHT-AATVSLILTLMLAKRSVYFKKIT 283
T H++S H+LKH AA V + LTLMLAKR+V ++I+
Sbjct: 218 THHIISGHSLKHLCAAMVPVFLTLMLAKRTVQTERIS 254
>dbj|BAB63619.1| P0483G10.13 [Oryza sativa (japonica cultivar-group)]
Length = 296
Score = 35.0 bits (79), Expect = 0.69
Identities = 19/37 (51%), Positives = 26/37 (69%), Gaps = 1/37 (2%)
Frame = +2
Query: 176 TFHMVSSHTLKH-TAATVSLILTLMLAKRSVYFKKIT 283
T +VS HTLKH AA V + L LMLAKR+V ++++
Sbjct: 223 THQIVSGHTLKHLAAAMVPVFLALMLAKRTVEPERVS 259
>gb|EAA24989.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 1189
Score = 31.2 bits (69), Expect = 10.0
Identities = 14/38 (36%), Positives = 20/38 (51%)
Frame = +1
Query: 217 CNGFSHFNPHACKEERLLQEDHMKSPPNMYRISRAKVK 330
CN S+ PHA L+ ED +K+ PN + +A K
Sbjct: 703 CNQCSYVCPHAAIRPFLINEDELKAAPNSFATKKAAGK 740
>ref|NP_604067.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586] gi|19714781|gb|AAL95366.1|
Pyruvate-flavodoxin oxidoreductase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 1188
Score = 31.2 bits (69), Expect = 10.0
Identities = 14/38 (36%), Positives = 20/38 (51%)
Frame = +1
Query: 217 CNGFSHFNPHACKEERLLQEDHMKSPPNMYRISRAKVK 330
CN S+ PHA L+ ED +K+ PN + +A K
Sbjct: 702 CNQCSYVCPHAAIRPFLINEDELKAAPNSFATKKATGK 739
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,951,796
Number of Sequences: 1393205
Number of extensions: 7672502
Number of successful extensions: 15088
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15085
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
