Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000261A_C01 KMC000261A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187680.1| putative DNA gyrase subunit A; protein id: At3g... 55 6e-07
gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabido... 55 6e-07
ref|ZP_00060466.1| hypothetical protein [Clostridium thermocellu... 46 4e-04
gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica] 45 5e-04
ref|NP_220594.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowaz... 45 5e-04
>ref|NP_187680.1| putative DNA gyrase subunit A; protein id: At3g10690.1 [Arabidopsis
thaliana] gi|12322780|gb|AAG51377.1|AC011560_9 putative
DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
Length = 917
Score = 55.1 bits (131), Expect = 6e-07
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = -1
Query: 523 SDEQVVLVSQSGTVNRIKVRDISIQSRFAR 434
SDEQVVLVSQSGTVNRIKVRDISIQSR AR
Sbjct: 870 SDEQVVLVSQSGTVNRIKVRDISIQSRRAR 899
Score = 35.0 bits (79), Expect = 0.64
Identities = 23/64 (35%), Positives = 33/64 (50%)
Frame = -1
Query: 523 SDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQSASLISATECEEPEEV 344
SD+ V + SQ+G V + SR +GV MRL + KI S +I A+ ++ EE
Sbjct: 752 SDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEK 811
Query: 343 LEVA 332
E A
Sbjct: 812 SEDA 815
>gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
Length = 899
Score = 55.1 bits (131), Expect = 6e-07
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = -1
Query: 523 SDEQVVLVSQSGTVNRIKVRDISIQSRFAR 434
SDEQVVLVSQSGTVNRIKVRDISIQSR AR
Sbjct: 852 SDEQVVLVSQSGTVNRIKVRDISIQSRRAR 881
Score = 35.0 bits (79), Expect = 0.64
Identities = 23/64 (35%), Positives = 33/64 (50%)
Frame = -1
Query: 523 SDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQSASLISATECEEPEEV 344
SD+ V + SQ+G V + SR +GV MRL + KI S +I A+ ++ EE
Sbjct: 734 SDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEK 793
Query: 343 LEVA 332
E A
Sbjct: 794 SEDA 797
>ref|ZP_00060466.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
Length = 220
Score = 45.8 bits (107), Expect = 4e-04
Identities = 24/70 (34%), Positives = 40/70 (56%)
Frame = -1
Query: 556 VVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQSASLI 377
V G L + D+ V+++S G++ RIK +DIS+ R +GV LMR+D + S + I
Sbjct: 150 VAGMKLVSE---DDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMDEGVSVVSVARI 206
Query: 376 SATECEEPEE 347
+ EE ++
Sbjct: 207 VNDDEEEKDD 216
>gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica]
Length = 905
Score = 45.4 bits (106), Expect = 5e-04
Identities = 25/62 (40%), Positives = 38/62 (60%), Gaps = 1/62 (1%)
Frame = -1
Query: 520 DEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQSASLISAT-ECEEPEEV 344
D++++L++ SG + R K+ + I R GVIL +LD K+ S SLI+ T E EE E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAETAESEEDSEL 894
Query: 343 LE 338
E
Sbjct: 895 EE 896
>ref|NP_220594.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii]
gi|729651|sp|P41080|GYRA_RICPR DNA gyrase subunit A
gi|7437468|pir||H71731 DNA gyrase chain A (gyrA) RP206 -
Rickettsia prowazekii gi|409961|gb|AAA68146.1| gyrase A
subunit gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A
(gyrA) [Rickettsia prowazekii] gi|1093608|prf||2104274A
DNA gyrase
Length = 905
Score = 45.4 bits (106), Expect = 5e-04
Identities = 25/62 (40%), Positives = 38/62 (60%), Gaps = 1/62 (1%)
Frame = -1
Query: 520 DEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQSASLISAT-ECEEPEEV 344
D++++L++ SG + R K+ + I R GVIL +LD K+ S SLI+ T E EE E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLIAETSESEEASEL 894
Query: 343 LE 338
E
Sbjct: 895 AE 896
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,822,549
Number of Sequences: 1393205
Number of extensions: 9490634
Number of successful extensions: 22624
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 21913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22618
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
