Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000259A_C01 KMC000259A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA22208.1| hypothetical protein [Plasmodium yoelii yoelii] 39 0.072
>gb|EAA22208.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 678
Score = 38.5 bits (88), Expect = 0.072
Identities = 32/124 (25%), Positives = 58/124 (45%), Gaps = 2/124 (1%)
Frame = +1
Query: 46 ISNIFKRT*HSIIHINRINKLKPISSIQT*IGNIIFNS*AT*FLVSKKKKLSS*LKQTLC 225
I N K I+HIN +N L S++ + N+I N+ + + KK++ + T C
Sbjct: 447 ILNDLKNLDEDILHINILNSLISYSNMTPLLLNVIINAHSNCLI----KKINEYISDTSC 502
Query: 226 --NELLLLGLKGKKKVLNTIVLVRICRIFNPQIRYQTDGD*CSKKNPNRTSDLIQSAIIC 399
NE L++GLK + + +I NP I S N + +++++ AI
Sbjct: 503 INNEKLIIGLKAFGYFFSINQVSKIFLSINPNIHVTA----ISTINTHAHTNVLRHAINI 558
Query: 400 WVRL 411
W+++
Sbjct: 559 WIKI 562
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 524,747,460
Number of Sequences: 1393205
Number of extensions: 11153843
Number of successful extensions: 26389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26377
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
