Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000256A_C01 KMC000256A_c01
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D71442 hypothetical protein - Arabidopsis thaliana gi|22450... 75 1e-12
emb|CAA10906.1| G2484-1 [Arabidopsis thaliana] 75 1e-12
ref|NP_193464.2| G2484-1 protein; protein id: At4g17330.1, suppo... 75 1e-12
gb|AAL79800.1|AC079874_23 unknown protein [Oryza sativa] 67 3e-10
ref|XP_137395.1| similar to vomeronasal 2, receptor, 2; vomerona... 37 0.28
>pir||D71442 hypothetical protein - Arabidopsis thaliana
gi|2245091|emb|CAB10513.1| hypothetical protein
[Arabidopsis thaliana] gi|7268484|emb|CAB78735.1|
hypothetical protein [Arabidopsis thaliana]
Length = 232
Score = 74.7 bits (182), Expect = 1e-12
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = -1
Query: 707 TKKVSTSRASKGKLAPAGDKLGKGEVEKTINDNPSKPTSDVTAQRRSNRRIQPTSRLLEG 528
+K S+ +KG++AP +L K E +K + +N SK TS+ RRS RRIQPTSRLLEG
Sbjct: 149 SKNSSSLSTNKGRVAPTAGRLAKIEEDKALAENSSK-TSEGMEPRRSIRRIQPTSRLLEG 207
Query: 527 LQSSLIISKIPSFSHNRN 474
LQ+S++ SKIPS SH+++
Sbjct: 208 LQTSMMTSKIPSVSHSKS 225
>emb|CAA10906.1| G2484-1 [Arabidopsis thaliana]
Length = 954
Score = 74.7 bits (182), Expect = 1e-12
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = -1
Query: 707 TKKVSTSRASKGKLAPAGDKLGKGEVEKTINDNPSKPTSDVTAQRRSNRRIQPTSRLLEG 528
+K S+ +KG++AP +L K E +K + +N SK TS+ RRS RRIQPTSRLLEG
Sbjct: 871 SKNSSSLSTNKGRVAPTAGRLAKIEEDKALAENSSK-TSEGMEPRRSIRRIQPTSRLLEG 929
Query: 527 LQSSLIISKIPSFSHNRN 474
LQ+S++ SKIPS SH+++
Sbjct: 930 LQTSMMTSKIPSVSHSKS 947
>ref|NP_193464.2| G2484-1 protein; protein id: At4g17330.1, supported by cDNA:
gi_20466527 [Arabidopsis thaliana]
gi|20466528|gb|AAM20581.1| G2484-1 protein [Arabidopsis
thaliana]
Length = 1058
Score = 74.7 bits (182), Expect = 1e-12
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = -1
Query: 707 TKKVSTSRASKGKLAPAGDKLGKGEVEKTINDNPSKPTSDVTAQRRSNRRIQPTSRLLEG 528
+K S+ +KG++AP +L K E +K + +N SK TS+ RRS RRIQPTSRLLEG
Sbjct: 975 SKNSSSLSTNKGRVAPTAGRLAKIEEDKALAENSSK-TSEGMEPRRSIRRIQPTSRLLEG 1033
Query: 527 LQSSLIISKIPSFSHNRN 474
LQ+S++ SKIPS SH+++
Sbjct: 1034 LQTSMMTSKIPSVSHSKS 1051
>gb|AAL79800.1|AC079874_23 unknown protein [Oryza sativa]
Length = 2036
Score = 66.6 bits (161), Expect = 3e-10
Identities = 45/96 (46%), Positives = 61/96 (62%), Gaps = 7/96 (7%)
Frame = -1
Query: 716 APPT--KKVSTSRASKGKLAPAGDKLGKGEVEKTINDNPSKPTSDVTAQRRSNRRIQPTS 543
A PT K ++T+ +K KL P+ D + KT ++ P K ++D T RRSNRRIQPTS
Sbjct: 1944 AAPTSRKNLTTTDRAKRKLVPSMDNSNR-TTNKT-SEIPGK-SADSTEPRRSNRRIQPTS 2000
Query: 542 RLLEGLQSSLIISKIPS-----FSHNRNTSKGNNQG 450
RLLEGLQSSLI+SK+P ++ +S+G N G
Sbjct: 2001 RLLEGLQSSLIVSKVPGEKGPRTNYRSASSRGRNLG 2036
>ref|XP_137395.1| similar to vomeronasal 2, receptor, 2; vomeronasal organ family 2,
receptor, 2 [Mus musculus]
Length = 2378
Score = 37.0 bits (84), Expect = 0.28
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Frame = -1
Query: 719 DAPPTKKVSTSRASKGKLAPAGDKLGKGEVEKTINDNPS------KPT-SDVTAQRRSNR 561
D+PP KK T + KG+ P +K GKGE + ++NP +PT S+ +Q S+
Sbjct: 1539 DSPP-KKTVTDTSGKGE-CPTSEKDGKGEDQSNDSENPENAGCHPEPTSSNFDSQDLSHH 1596
Query: 560 RI-----QPTSRLLEGLQSSLII-SKIPSFSHNRN---TSKGNNQG*TVGASNDEMKFGT 408
+ +P ++ G + L++ +K+ + +RN + G + G +G + + G
Sbjct: 1597 LLHISVNRPAGPVIRGSRGDLLLRTKLGATQGSRNLVVSGYGQDIGDDLGLEHSVVVLGI 1656
Query: 407 SPLLRW 390
P+ W
Sbjct: 1657 EPICFW 1662
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,080,767
Number of Sequences: 1393205
Number of extensions: 11108965
Number of successful extensions: 26422
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26360
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
