Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000242A_C01 KMC000242A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P35016|ENPL_CATRO Endoplasmin homolog precursor (GRP94 homolo... 186 2e-46
gb|AAF64453.1|AF239931_1 putative heat-shock protein 90 [Euphorb... 173 2e-42
gb|AAN34791.1| Grp94 [Xerophyta viscosa] 169 3e-41
dbj|BAB86368.1| SHEPHERD [Arabidopsis thaliana] 164 1e-39
ref|NP_194150.1| HSP90-like protein; protein id: At4g24190.1, su... 163 2e-39
>sp|P35016|ENPL_CATRO Endoplasmin homolog precursor (GRP94 homolog) gi|542022|pir||S39558
HSP90 homolog - Madagascar periwinkle
gi|348696|gb|AAA16785.1| heat shock protein 90
Length = 817
Score = 186 bits (471), Expect = 2e-46
Identities = 99/129 (76%), Positives = 110/129 (84%), Gaps = 1/129 (0%)
Frame = -3
Query: 574 SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDESVKQTAQLMYQTALFESG 395
SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVK+ EDESVKQTA+LMYQTAL ESG
Sbjct: 694 SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDAEDESVKQTARLMYQTALMESG 753
Query: 394 FLLNDPKDFASRIYDSVKSSLEISPDATVEEEDDT-EVEAESETKEDASTSEPAGDAVND 218
F+LNDPK+FAS IYDSVKSSL+ISPDATVEEEDDT E EAES T E ++ + + +
Sbjct: 754 FMLNDPKEFASSIYDSVKSSLKISPDATVEEEDDTEEAEAESGTTESSAAEDAGAETL-- 811
Query: 217 ADADVKDEL 191
D+KDEL
Sbjct: 812 ---DLKDEL 817
>gb|AAF64453.1|AF239931_1 putative heat-shock protein 90 [Euphorbia esula]
Length = 317
Score = 173 bits (438), Expect = 2e-42
Identities = 89/128 (69%), Positives = 103/128 (79%)
Frame = -3
Query: 574 SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDESVKQTAQLMYQTALFESG 395
+QTLSDA KQAYM+GKRVLEINPRHPIIKELRERVVK+PEDE+VKQTA L+YQTAL ESG
Sbjct: 193 AQTLSDAKKQAYMKGKRVLEINPRHPIIKELRERVVKDPEDENVKQTAHLIYQTALMESG 252
Query: 394 FLLNDPKDFASRIYDSVKSSLEISPDATVEEEDDTEVEAESETKEDASTSEPAGDAVNDA 215
F+L+DPKDFASRIY SVKSSL ISPDA+VEEE++ E E+E + D S A
Sbjct: 253 FMLSDPKDFASRIYSSVKSSLNISPDASVEEEEEVE---ETEPEPDTKESSKADSEAAKE 309
Query: 214 DADVKDEL 191
+ + KDEL
Sbjct: 310 ETEAKDEL 317
>gb|AAN34791.1| Grp94 [Xerophyta viscosa]
Length = 812
Score = 169 bits (427), Expect = 3e-41
Identities = 93/130 (71%), Positives = 105/130 (80%), Gaps = 2/130 (1%)
Frame = -3
Query: 574 SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDESVKQTAQLMYQTALFESG 395
SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERV +P+DE++KQTA+L+YQTAL ESG
Sbjct: 690 SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVAVDPQDENIKQTAKLIYQTALMESG 749
Query: 394 FLLNDPKDFASRIYDSVKSSLEISPDATVEEEDDTEVEAESETKEDAST--SEPAGDAVN 221
FL+NDPK+FA+ IY SVKSSL ISPDA VEEE+DT+ E E E KE AS+ SE A
Sbjct: 750 FLMNDPKEFATSIYSSVKSSLNISPDAKVEEEEDTD-EPEVEEKESASSKGSEEA----- 803
Query: 220 DADADVKDEL 191
D KDEL
Sbjct: 804 -EDFSAKDEL 812
>dbj|BAB86368.1| SHEPHERD [Arabidopsis thaliana]
Length = 823
Score = 164 bits (414), Expect = 1e-39
Identities = 84/134 (62%), Positives = 101/134 (74%), Gaps = 6/134 (4%)
Frame = -3
Query: 574 SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDESVKQTAQLMYQTALFESG 395
SQTLSDA+KQAYMRGKRVLEINPRHPIIKEL++R+ +PEDESVK+TAQLMYQTAL ESG
Sbjct: 690 SQTLSDANKQAYMRGKRVLEINPRHPIIKELKDRIASDPEDESVKETAQLMYQTALIESG 749
Query: 394 FLLNDPKDFASRIYDSVKSSLEISPDATVEEEDDTEVEAESETKEDASTSEPAG------ 233
FLL DPKDFA+RIY+SVKS L ISPDA +EE + E E+ + + + AG
Sbjct: 750 FLLTDPKDFAARIYNSVKSGLNISPDAVADEEVEAAEEPETSEATETKSDDLAGGLNIEA 809
Query: 232 DAVNDADADVKDEL 191
+ V + + KDEL
Sbjct: 810 EPVEQQEENTKDEL 823
>ref|NP_194150.1| HSP90-like protein; protein id: At4g24190.1, supported by cDNA:
gi_14532541, supported by cDNA: gi_19570871 [Arabidopsis
thaliana] gi|7441896|pir||T09882 heat shock protein 90
homolog T22A6.20 - Arabidopsis thaliana
gi|5051761|emb|CAB45054.1| HSP90-like protein
[Arabidopsis thaliana] gi|7269269|emb|CAB79329.1|
HSP90-like protein [Arabidopsis thaliana]
gi|14532542|gb|AAK63999.1| AT4g24190/T22A6_20
[Arabidopsis thaliana] gi|19570872|dbj|BAB86369.1|
SHEPHERD [Arabidopsis thaliana]
gi|28416485|gb|AAO42773.1| At4g24190/T22A6_20
[Arabidopsis thaliana]
Length = 823
Score = 163 bits (412), Expect = 2e-39
Identities = 83/134 (61%), Positives = 101/134 (74%), Gaps = 6/134 (4%)
Frame = -3
Query: 574 SQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDESVKQTAQLMYQTALFESG 395
SQTLSDA+KQAYMRGKRVLEINPRHPIIKEL++R+ +PEDESVK+TAQLMYQTAL ESG
Sbjct: 690 SQTLSDANKQAYMRGKRVLEINPRHPIIKELKDRIASDPEDESVKETAQLMYQTALIESG 749
Query: 394 FLLNDPKDFASRIYDSVKSSLEISPDATVEEEDDTEVEAESETKEDASTSEPAG------ 233
F+L DPKDFA+RIY+SVKS L ISPDA +EE + E E+ + + + AG
Sbjct: 750 FILTDPKDFAARIYNSVKSGLNISPDAVADEEIEAAEEPETSEATETKSDDLAGGLNIEA 809
Query: 232 DAVNDADADVKDEL 191
+ V + + KDEL
Sbjct: 810 EPVEQQEENTKDEL 823
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,090,140
Number of Sequences: 1393205
Number of extensions: 7407094
Number of successful extensions: 46272
Number of sequences better than 10.0: 647
Number of HSP's better than 10.0 without gapping: 36495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43962
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
