Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000229A_C03 KMC000229A_c03
(753 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568107.1| putative protein; protein id: At5g02810.1, supp... 66 5e-10
pir||T48302 hypothetical protein F9G14.120 - Arabidopsis thalian... 66 5e-10
gb|AAN64489.1| putative pseudo-response regulator [Oryza sativa ... 48 2e-04
ref|NP_568919.1| pseudo-response regulator - like; protein id: A... 45 0.001
sp|Q10156|LKH1_SCHPO Protein kinase lkh1 gi|25527315|pir||JC7794... 39 0.10
>ref|NP_568107.1| putative protein; protein id: At5g02810.1, supported by cDNA:
gi_10281003, supported by cDNA: gi_14532637 [Arabidopsis
thaliana] gi|10281004|dbj|BAB13742.1| pseudo-response
regulator 7 [Arabidopsis thaliana]
gi|14532638|gb|AAK64047.1| unknown protein [Arabidopsis
thaliana] gi|23296600|gb|AAN13129.1| unknown protein
[Arabidopsis thaliana]
Length = 727
Score = 66.2 bits (160), Expect = 5e-10
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = +2
Query: 539 EGRGLCEGDEVKCNGVAEEVKVGXGGNVESSSVQQPMPQLQPQGVCWERFLHIRSLKVLL 718
E R +E K NG+ +V+ G G + Q P+ Q VCWERFLH+R+++VLL
Sbjct: 28 ESRTEKHSEEEKTNGITMDVRNGSSGGL-----QIPLSQQTAATVCWERFLHVRTIRVLL 82
Query: 719 VEYDDCTRFIV 751
VE DDCTR+IV
Sbjct: 83 VENDDCTRYIV 93
>pir||T48302 hypothetical protein F9G14.120 - Arabidopsis thaliana
gi|7413556|emb|CAB86035.1| putative protein [Arabidopsis
thaliana]
Length = 720
Score = 66.2 bits (160), Expect = 5e-10
Identities = 33/71 (46%), Positives = 44/71 (61%)
Frame = +2
Query: 539 EGRGLCEGDEVKCNGVAEEVKVGXGGNVESSSVQQPMPQLQPQGVCWERFLHIRSLKVLL 718
E R +E K NG+ +V+ G G + Q P+ Q VCWERFLH+R+++VLL
Sbjct: 28 ESRTEKHSEEEKTNGITMDVRNGSSGGL-----QIPLSQQTAATVCWERFLHVRTIRVLL 82
Query: 719 VEYDDCTRFIV 751
VE DDCTR+IV
Sbjct: 83 VENDDCTRYIV 93
>gb|AAN64489.1| putative pseudo-response regulator [Oryza sativa (japonica
cultivar-group)]
Length = 789
Score = 47.8 bits (112), Expect = 2e-04
Identities = 32/90 (35%), Positives = 46/90 (50%), Gaps = 7/90 (7%)
Frame = +2
Query: 503 GKKKTSDEGVAGEGRGLCEG-------DEVKCNGVAEEVKVGXGGNVESSSVQQPMPQLQ 661
G + S + V G G G+ E +E NG+ E++ G E + + Q
Sbjct: 8 GTDEPSRDDVKGTGNGILENGHSHKPEEEEWRNGMGEDLPNGHSTPPEPQQTDE-QKEHQ 66
Query: 662 PQGVCWERFLHIRSLKVLLVEYDDCTRFIV 751
Q V WERFL +++L+VLLVE DD TR +V
Sbjct: 67 VQIVRWERFLPVKTLRVLLVENDDSTRQVV 96
>ref|NP_568919.1| pseudo-response regulator - like; protein id: At5g60100.1,
supported by cDNA: gi_10281007 [Arabidopsis thaliana]
gi|8777349|dbj|BAA96939.1|
emb|CAB86035.1~gene_id:MGO3.8~similar to unknown protein
[Arabidopsis thaliana] gi|10281008|dbj|BAB13744.1|
pseudo-response regulator 3 [Arabidopsis thaliana]
Length = 495
Score = 45.1 bits (105), Expect = 0.001
Identities = 31/69 (44%), Positives = 37/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 548 GLCEGDEVKCNGVAEEVKVGXGGNVE-SSSVQQPMPQLQPQGVCWERFLHIRSLKVLLVE 724
G E DE + A NV+ S QQP+ + V WER+L +RSLKVLLVE
Sbjct: 20 GSSEEDEFRVEDTARNTN-----NVQISQQQQQPLAHV----VKWERYLPVRSLKVLLVE 70
Query: 725 YDDCTRFIV 751
DD TR IV
Sbjct: 71 NDDSTRHIV 79
>sp|Q10156|LKH1_SCHPO Protein kinase lkh1 gi|25527315|pir||JC7794 lammer kinase homolog
protein 1, Lkh1 protein - fission yeast
(Schizosaccharomyces pombe) gi|13095564|gb|AAK12335.1|
LAMMER kinase-like protein [Schizosaccharomyces pombe]
gi|20218765|emb|CAD29835.1| dual specificity protein
kinase; LAMMER family; negative regulator of filamentous
growth and flocculation; serine/threonine protein
kinase; similar to S. cerevisiae KNS1
[Schizosaccharomyces pombe]
Length = 575
Score = 38.5 bits (88), Expect = 0.10
Identities = 27/102 (26%), Positives = 42/102 (40%), Gaps = 3/102 (2%)
Frame = -2
Query: 737 YSHHTPQARP*EI*YVKTSPNIPLEAVAGAW---AAGQKRIPHSPLVQP*LLPPLHYISL 567
+SHH P P + P+ V W + +PH P+ +P ++P L + +
Sbjct: 20 HSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQV 79
Query: 566 HHPHTNLVPHPQLLHPRSSSSHLVNADYSPLYCRHQHSSDHP 441
H N +PHP HP SS + Y P C + +P
Sbjct: 80 H---PNRLPHPIHNHPYSSPT-----SYPPPLCPATYCPSNP 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 632,240,336
Number of Sequences: 1393205
Number of extensions: 14386215
Number of successful extensions: 61269
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 54027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60434
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
