Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000225A_C03 KMC000225A_c03
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||PQ0200 glycinin Gy5 - soybean (fragment) 33 4.0
gb|ZP_00114227.1| hypothetical protein [Prochlorococcus marinus ... 32 8.9
gb|AAB48002.1| high-affinity glutamine permease 32 8.9
ref|NP_010796.1| high-affinity glutamine permease; Gnp1p [Saccha... 32 8.9
>pir||PQ0200 glycinin Gy5 - soybean (fragment)
Length = 186
Score = 32.7 bits (73), Expect = 4.0
Identities = 20/63 (31%), Positives = 35/63 (54%), Gaps = 5/63 (7%)
Frame = +1
Query: 271 SLEYFGYLARVLLLVYSLLFSSRF-FQSSASIYTPR----IRVERCMGNATVGGQFWKIQ 435
+L FG A+ ++L + ++S + +++ IY R +RV C GNA GG+ + Q
Sbjct: 56 ALRQFGLSAQYVVLYKNEIYSPHWNLNANSVIYVTRGXGRVRVVNCQGNAMFGGELRRGQ 115
Query: 436 LLL 444
LL+
Sbjct: 116 LLM 118
>gb|ZP_00114227.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313]
Length = 304
Score = 31.6 bits (70), Expect = 8.9
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = -3
Query: 325 EVNIQEATHAQDIQNIL-SFLSSGNLFSLHSAYSEANPGKP-PTFKQLFDFPLGDQG*SD 152
+V Q ++ QD+ + +FL++ L SL + EA P P F++ F+ LG+QG D
Sbjct: 65 QVQRQGGSYEQDLADSSEAFLAASVLVSLKAEVLEAQTFPPEPLFEEGFEAELGEQGWLD 124
Query: 151 PRGRLKR 131
P L R
Sbjct: 125 PSFALPR 131
>gb|AAB48002.1| high-affinity glutamine permease
Length = 663
Score = 31.6 bits (70), Expect = 8.9
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
Frame = +2
Query: 290 ILRVCCFLYIHFSSLAASFNLQPLYILQ-GLGLSVAW 397
I++ C L + +S L FN PL+++ LG SVAW
Sbjct: 197 IIQACGELAVIYSDLIGGFNTYPLFLVDPALGFSVAW 233
>ref|NP_010796.1| high-affinity glutamine permease; Gnp1p [Saccharomyces cerevisiae]
gi|1708002|sp|P48813|GNP1_YEAST HIGH-AFFINITY GLUTAMINE
PERMEASE gi|2119772|pir||S69566 glutamine transport
protein, high affinity - yeast (Saccharomyces
cerevisiae) gi|927778|gb|AAB64950.1| Gnp1p:
high-affinity glutamine permease; CAI: 0.20
[Saccharomyces cerevisiae]
Length = 663
Score = 31.6 bits (70), Expect = 8.9
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
Frame = +2
Query: 290 ILRVCCFLYIHFSSLAASFNLQPLYILQ-GLGLSVAW 397
I++ C L + +S L FN PL+++ LG SVAW
Sbjct: 197 IIQACGELAVIYSDLIGGFNTYPLFLVDPALGFSVAW 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,175,698
Number of Sequences: 1393205
Number of extensions: 9163441
Number of successful extensions: 23180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23075
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
