Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000215A_C01 KMC000215A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO61490.1| arm repeat-containing protein [Nicotiana tabacum] 117 9e-26
dbj|BAB90382.1| B1065E10.33 [Oryza sativa (japonica cultivar-gro... 105 3e-22
dbj|BAC43212.1| unknown protein [Arabidopsis thaliana] 96 2e-19
ref|NP_179895.1| hypothetical protein; protein id: At2g23140.1 [... 84 1e-15
ref|NP_191039.1| putative protein; protein id: At3g54790.1 [Arab... 80 2e-14
>gb|AAO61490.1| arm repeat-containing protein [Nicotiana tabacum]
Length = 790
Score = 117 bits (293), Expect = 9e-26
Identities = 58/72 (80%), Positives = 66/72 (91%)
Frame = -2
Query: 551 VELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALLNQ 372
VELGSARGKENAAAALL LC +S+RF + VLQ+GAVPPLVALSQSGTPRA+EKAQ LL+
Sbjct: 719 VELGSARGKENAAAALLQLCTNSSRFCNMVLQEGAVPPLVALSQSGTPRAREKAQQLLSY 778
Query: 371 FRSQRHGNSGRG 336
FR+QRHGN+GRG
Sbjct: 779 FRNQRHGNAGRG 790
Score = 40.8 bits (94), Expect = 0.011
Identities = 29/72 (40%), Positives = 39/72 (53%), Gaps = 1/72 (1%)
Frame = -2
Query: 551 VELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRA-KEKAQALLN 375
++ GSA KEN+AA L L + + + + GA+ PLV L +GTPR K+ A AL N
Sbjct: 597 LQTGSAEAKENSAATLFSLSVMEENKMK-IGRSGAIKPLVDLLGNGTPRGKKDAATALFN 655
Query: 374 QFRSQRHGNSGR 339
S H N R
Sbjct: 656 --LSILHENKSR 665
Score = 32.0 bits (71), Expect = 5.1
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = -2
Query: 527 KENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALL 378
+E+A ALL+L ++ N + + A+ PL+ + Q+G+ AKE + A L
Sbjct: 564 QEDAVTALLNLSINDNNKCA-IANADAIEPLIHVLQTGSAEAKENSAATL 612
>dbj|BAB90382.1| B1065E10.33 [Oryza sativa (japonica cultivar-group)]
Length = 789
Score = 105 bits (263), Expect = 3e-22
Identities = 54/72 (75%), Positives = 60/72 (83%)
Frame = -2
Query: 551 VELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALLNQ 372
VELGSAR KENAAAALL LC +SNRF + VLQ+G VPPLVALSQSGT RA+EKAQ LL+
Sbjct: 707 VELGSARSKENAAAALLQLCTNSNRFCTLVLQEGVVPPLVALSQSGTARAREKAQVLLSY 766
Query: 371 FRSQRHGNSGRG 336
FR+QRH GRG
Sbjct: 767 FRNQRHVRVGRG 778
Score = 33.5 bits (75), Expect = 1.8
Identities = 19/58 (32%), Positives = 31/58 (52%)
Frame = -2
Query: 551 VELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALL 378
+++G+ K N+AA L L + + + + GA+ PLV L GTP+ K+ A L
Sbjct: 585 LQVGNPEAKANSAATLFSLSVIEENKIK-IGRSGAIEPLVDLLGEGTPQGKKDAATAL 641
Score = 32.0 bits (71), Expect = 5.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 527 KENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALL 378
+ENA LL+L L N ++ + A+ PL+ + Q G P AK + A L
Sbjct: 552 QENAVTILLNLSLDDNNKIA-IASAEAIEPLIFVLQVGNPEAKANSAATL 600
>dbj|BAC43212.1| unknown protein [Arabidopsis thaliana]
Length = 760
Score = 96.3 bits (238), Expect = 2e-19
Identities = 48/72 (66%), Positives = 58/72 (79%)
Frame = -2
Query: 551 VELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALLNQ 372
V+LGS RGKENAA+ LL LCL+S +F + VLQ+GA+PPLVALSQSGT RAKEKAQ LL+
Sbjct: 687 VDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSH 746
Query: 371 FRSQRHGNSGRG 336
FR+QR +G
Sbjct: 747 FRNQRDARMKKG 758
Score = 33.1 bits (74), Expect = 2.3
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = -2
Query: 527 KENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALL 378
+E+A ALL+L + S + +++ GAV PLV + +G RAKE + A L
Sbjct: 531 QEHAVTALLNLSI-SELNKAMIVEVGAVEPLVHVLNTGNDRAKENSAASL 579
>ref|NP_179895.1| hypothetical protein; protein id: At2g23140.1 [Arabidopsis
thaliana] gi|7487248|pir||T00518 hypothetical protein
At2g23140 [imported] - Arabidopsis thaliana
gi|2642448|gb|AAB87116.1| hypothetical protein
[Arabidopsis thaliana] gi|20197130|gb|AAM14930.1|
hypothetical protein [Arabidopsis thaliana]
Length = 924
Score = 84.0 bits (206), Expect = 1e-15
Identities = 43/53 (81%), Positives = 47/53 (88%)
Frame = -2
Query: 551 VELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEK 393
VELGSARGKENAAAALL L +S RF + VLQ+GAVPPLVALSQSGTPRA+EK
Sbjct: 834 VELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREK 886
Score = 40.4 bits (93), Expect = 0.014
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = -2
Query: 551 VELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALL 378
+E GS+ KEN+AA L L + + + Q GA+ PLV L +GTPR K+ A L
Sbjct: 712 LENGSSEAKENSAATLFSLSVIEENKIK-IGQSGAIGPLVDLLGNGTPRGKKDAATAL 768
Score = 35.8 bits (81), Expect = 0.35
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -2
Query: 527 KENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALL 378
+ENA ALL+L ++ N + GA+ PL+ + ++G+ AKE + A L
Sbjct: 679 QENAVTALLNLSINDNN-KKAIADAGAIEPLIHVLENGSSEAKENSAATL 727
>ref|NP_191039.1| putative protein; protein id: At3g54790.1 [Arabidopsis thaliana]
gi|11358376|pir||T47638 hypothetical protein T5N23.150 -
Arabidopsis thaliana gi|7258383|emb|CAB77599.1| putative
protein [Arabidopsis thaliana]
Length = 727
Score = 80.1 bits (196), Expect = 2e-14
Identities = 39/57 (68%), Positives = 47/57 (82%)
Frame = -2
Query: 551 VELGSARGKENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQAL 381
V+LGS RGKENAA+ LL LCL+S +F + VLQ+GA+PPLVALSQSGT RAKEK +
Sbjct: 651 VDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKVYTI 707
Score = 32.7 bits (73), Expect = 3.0
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -2
Query: 527 KENAAAALLHLCLHSNRFLSTVLQQGAVPPLVALSQSGTPRAKEKAQALL 378
+E+A ALL+L + S + +++ GA+ PLV + +G RAKE + A L
Sbjct: 495 QEHAVTALLNLSI-SELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASL 543
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,039,165
Number of Sequences: 1393205
Number of extensions: 10238934
Number of successful extensions: 31356
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 30197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31315
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
