Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000212A_C02 KMC000212A_c02
(758 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK11735.1| starch associated protein R1 [Solanum tuberosum] 186 2e-46
pir||T07050 hypothetical protein R1 - potato gi|3287270|emb|CAA7... 186 2e-46
gb|AAM18228.1| R1 [Citrus reticulata] 174 9e-43
gb|AAK96541.1| At1g10760/F20B24.26 [Arabidopsis thaliana] 172 6e-42
pir||B86241 hypothetical protein [imported] - Arabidopsis thalia... 172 6e-42
>gb|AAK11735.1| starch associated protein R1 [Solanum tuberosum]
Length = 1464
Score = 186 bits (473), Expect = 2e-46
Identities = 89/101 (88%), Positives = 100/101 (98%)
Frame = -1
Query: 758 SKPIGLYIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVLDYSSDPLIVDGSFRK 579
SKPIGL+I+RSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVV+DYSSDPLI DG+FR+
Sbjct: 1364 SKPIGLFIKRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVIDYSSDPLITDGNFRQ 1423
Query: 578 SILSSLARAGNAIEELYGSPQDIEGVIRDGKVYVVQTRPQM 456
+ILS++ARAG+AIEELYGSPQDIEGV+RDGK+YVVQTRPQM
Sbjct: 1424 TILSNIARAGHAIEELYGSPQDIEGVVRDGKIYVVQTRPQM 1464
>pir||T07050 hypothetical protein R1 - potato gi|3287270|emb|CAA70725.1| involved
in starch metabalism [Solanum tuberosum]
Length = 1464
Score = 186 bits (473), Expect = 2e-46
Identities = 89/101 (88%), Positives = 100/101 (98%)
Frame = -1
Query: 758 SKPIGLYIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVLDYSSDPLIVDGSFRK 579
SKPIGL+I+RSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVV+DYSSDPLI DG+FR+
Sbjct: 1364 SKPIGLFIKRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVIDYSSDPLITDGNFRQ 1423
Query: 578 SILSSLARAGNAIEELYGSPQDIEGVIRDGKVYVVQTRPQM 456
+ILS++ARAG+AIEELYGSPQDIEGV+RDGK+YVVQTRPQM
Sbjct: 1424 TILSNIARAGHAIEELYGSPQDIEGVVRDGKIYVVQTRPQM 1464
>gb|AAM18228.1| R1 [Citrus reticulata]
Length = 1475
Score = 174 bits (442), Expect = 9e-43
Identities = 87/101 (86%), Positives = 94/101 (92%)
Frame = -1
Query: 758 SKPIGLYIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVLDYSSDPLIVDGSFRK 579
SKPIGL+IRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDE EKVVLDYSSD LI DG F++
Sbjct: 1375 SKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDHLITDGHFQQ 1434
Query: 578 SILSSLARAGNAIEELYGSPQDIEGVIRDGKVYVVQTRPQM 456
SILSS+ARAG IEEL+GS QDIEGV+RDGK+YVVQTRPQM
Sbjct: 1435 SILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 1475
>gb|AAK96541.1| At1g10760/F20B24.26 [Arabidopsis thaliana]
Length = 170
Score = 172 bits (435), Expect = 6e-42
Identities = 83/101 (82%), Positives = 96/101 (94%)
Frame = -1
Query: 758 SKPIGLYIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVLDYSSDPLIVDGSFRK 579
SKPIGL+IRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEE++VVLDY++DPLI D SF+K
Sbjct: 70 SKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEDQVVLDYTTDPLITDLSFQK 129
Query: 578 SILSSLARAGNAIEELYGSPQDIEGVIRDGKVYVVQTRPQM 456
+LS +ARAG+AIE+LYG+ QDIEGVIRDGK+YVVQTRPQ+
Sbjct: 130 KVLSDIARAGDAIEKLYGTAQDIEGVIRDGKLYVVQTRPQV 170
>pir||B86241 hypothetical protein [imported] - Arabidopsis thaliana
gi|4874272|gb|AAD31337.1|AC007354_10 Strong similarity to
gb|Y09533 involved in starch metabolism from Solanum
tuberosum and contains a PF|01326 Pyruvate phosphate
dikinase, PEP/pyruvate binding domain. EST gb|N96757
comes from this gene. [Arabidopsis thaliana]
Length = 1358
Score = 172 bits (435), Expect = 6e-42
Identities = 83/101 (82%), Positives = 96/101 (94%)
Frame = -1
Query: 758 SKPIGLYIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVLDYSSDPLIVDGSFRK 579
SKPIGL+IRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEE++VVLDY++DPLI D SF+K
Sbjct: 1258 SKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEDQVVLDYTTDPLITDLSFQK 1317
Query: 578 SILSSLARAGNAIEELYGSPQDIEGVIRDGKVYVVQTRPQM 456
+LS +ARAG+AIE+LYG+ QDIEGVIRDGK+YVVQTRPQ+
Sbjct: 1318 KVLSDIARAGDAIEKLYGTAQDIEGVIRDGKLYVVQTRPQV 1358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 624,488,628
Number of Sequences: 1393205
Number of extensions: 13519453
Number of successful extensions: 32215
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 31075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32146
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
