Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000200A_C01 KMC000200A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178306.1| endomembrane protein 70, putative; protein id: ... 226 2e-58
gb|AAF63170.1|AC010657_6 T5E21.15 [Arabidopsis thaliana] 224 6e-58
ref|NP_172919.1| endomembrane protein 70, putative; protein id: ... 224 6e-58
gb|AAF79217.1|AC006917_2 F10B6.3 [Arabidopsis thaliana] 224 6e-58
gb|AAO06970.1| Putative endosomal protein [Oryza sativa (japonic... 219 3e-56
>ref|NP_178306.1| endomembrane protein 70, putative; protein id: At2g01970.1,
supported by cDNA: gi_16604500 [Arabidopsis thaliana]
gi|25346718|pir||D84431 probable endosomal protein
[imported] - Arabidopsis thaliana
gi|4406780|gb|AAD20090.1| putative endosomal protein
[Arabidopsis thaliana] gi|16604501|gb|AAL24256.1|
At2g01970/F14H20.4 [Arabidopsis thaliana]
Length = 592
Score = 226 bits (577), Expect = 2e-58
Identities = 106/107 (99%), Positives = 106/107 (99%)
Frame = -3
Query: 653 ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSD 474
ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSD
Sbjct: 486 ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSD 545
Query: 473 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALFFVRHIYRSIKCE 333
MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAAL FVRHIYRSIKCE
Sbjct: 546 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE 592
>gb|AAF63170.1|AC010657_6 T5E21.15 [Arabidopsis thaliana]
Length = 546
Score = 224 bits (572), Expect = 6e-58
Identities = 104/107 (97%), Positives = 106/107 (98%)
Frame = -3
Query: 653 ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSD 474
ILFIVFIIL+IVTAFITVALTYFQLAAEDH+WWWRSFLCGGSTGLFIYAYCLYYYYARSD
Sbjct: 440 ILFIVFIILIIVTAFITVALTYFQLAAEDHQWWWRSFLCGGSTGLFIYAYCLYYYYARSD 499
Query: 473 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALFFVRHIYRSIKCE 333
MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAAL FVRHIYRSIKCE
Sbjct: 500 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE 546
>ref|NP_172919.1| endomembrane protein 70, putative; protein id: At1g14670.1,
supported by cDNA: gi_15450754, supported by cDNA:
gi_20334721 [Arabidopsis thaliana]
gi|15450755|gb|AAK96649.1| T5E21.14/T5E21.14
[Arabidopsis thaliana] gi|20334722|gb|AAM16222.1|
At1g14670/T5E21.14 [Arabidopsis thaliana]
Length = 592
Score = 224 bits (572), Expect = 6e-58
Identities = 104/107 (97%), Positives = 106/107 (98%)
Frame = -3
Query: 653 ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSD 474
ILFIVFIIL+IVTAFITVALTYFQLAAEDH+WWWRSFLCGGSTGLFIYAYCLYYYYARSD
Sbjct: 486 ILFIVFIILIIVTAFITVALTYFQLAAEDHQWWWRSFLCGGSTGLFIYAYCLYYYYARSD 545
Query: 473 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALFFVRHIYRSIKCE 333
MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAAL FVRHIYRSIKCE
Sbjct: 546 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE 592
>gb|AAF79217.1|AC006917_2 F10B6.3 [Arabidopsis thaliana]
Length = 336
Score = 224 bits (572), Expect = 6e-58
Identities = 104/107 (97%), Positives = 106/107 (98%)
Frame = -3
Query: 653 ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSD 474
ILFIVFIIL+IVTAFITVALTYFQLAAEDH+WWWRSFLCGGSTGLFIYAYCLYYYYARSD
Sbjct: 230 ILFIVFIILIIVTAFITVALTYFQLAAEDHQWWWRSFLCGGSTGLFIYAYCLYYYYARSD 289
Query: 473 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALFFVRHIYRSIKCE 333
MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAAL FVRHIYRSIKCE
Sbjct: 290 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE 336
>gb|AAO06970.1| Putative endosomal protein [Oryza sativa (japonica cultivar-group)]
Length = 595
Score = 219 bits (558), Expect = 3e-56
Identities = 100/107 (93%), Positives = 103/107 (95%)
Frame = -3
Query: 653 ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSD 474
ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTG F+Y YCLYYYYARSD
Sbjct: 489 ILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRSFLCGGSTGFFVYGYCLYYYYARSD 548
Query: 473 MSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALFFVRHIYRSIKCE 333
MSGFMQTSFFFGYMACICY FFLMLG +GFRAALFFVRHIY+SIKCE
Sbjct: 549 MSGFMQTSFFFGYMACICYAFFLMLGMIGFRAALFFVRHIYKSIKCE 595
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,114,813
Number of Sequences: 1393205
Number of extensions: 12747846
Number of successful extensions: 44464
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 40154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44241
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
