Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000199A_C01 KMC000199A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197006.1| transcriptional regulatory - like protein; prot... 79 5e-14
emb|CAA71002.2| pSbaNS5 protein [Sorghum bicolor] 70 1e-11
pir||T14734 NS5 protein - sorghum (fragment) 70 1e-11
ref|NP_186781.1| unknown protein; protein id: At3g01320.1 [Arabi... 68 9e-11
ref|NP_177163.1| hypothetical protein; protein id: At1g70060.1 [... 58 1e-07
>ref|NP_197006.1| transcriptional regulatory - like protein; protein id: At5g15020.1
[Arabidopsis thaliana] gi|11358896|pir||T51447
transcription regulator-like protein - Arabidopsis
thaliana gi|9755669|emb|CAC01821.1| transcriptional
regulatory-like protein [Arabidopsis thaliana]
Length = 1377
Score = 78.6 bits (192), Expect = 5e-14
Identities = 38/77 (49%), Positives = 56/77 (72%)
Frame = -1
Query: 571 YGKLDDLSAICAAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRTKRRTPSATTTS 392
Y LDDL+ C AMEGV+VINGLECK++C+S KISYVLDT+DFF R + ++++ + +
Sbjct: 1301 YNGLDDLAVACKAMEGVQVINGLECKMSCSSYKISYVLDTEDFFHRKKKQKKSNNLSLAK 1360
Query: 391 RSRKDREERYRRLLVSS 341
S ++R R+ + L +S
Sbjct: 1361 LS-QNRIARFHKFLSAS 1376
>emb|CAA71002.2| pSbaNS5 protein [Sorghum bicolor]
Length = 235
Score = 70.5 bits (171), Expect = 1e-11
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Frame = -1
Query: 574 KYGKLDDLSAICAAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRTKRR------T 413
KY D+ S AM+ +KV+NGLECKI+C +SK+SYVLDT+DF FR R +R+
Sbjct: 42 KYSNNDEPSDSLKAMDSIKVVNGLECKISCKTSKVSYVLDTEDFLFRLRKRRKILRGGNV 101
Query: 412 PSATTTSRSRKDREERYRRLL 350
P + S+ + +R+ R L
Sbjct: 102 PDSLQISKIYAAKVQRFNRFL 122
>pir||T14734 NS5 protein - sorghum (fragment)
Length = 210
Score = 70.5 bits (171), Expect = 1e-11
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Frame = -1
Query: 574 KYGKLDDLSAICAAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRTKRR------T 413
KY D+ S AM+ +KV+NGLECKI+C +SK+SYVLDT+DF FR R +R+
Sbjct: 17 KYSNNDEPSDSLKAMDSIKVVNGLECKISCKTSKVSYVLDTEDFLFRLRKRRKILRGGNV 76
Query: 412 PSATTTSRSRKDREERYRRLL 350
P + S+ + +R+ R L
Sbjct: 77 PDSLQISKIYAAKVQRFNRFL 97
>ref|NP_186781.1| unknown protein; protein id: At3g01320.1 [Arabidopsis thaliana]
gi|6094552|gb|AAF03494.1|AC010676_4 unknown protein
[Arabidopsis thaliana]
Length = 1324
Score = 67.8 bits (164), Expect = 9e-11
Identities = 29/50 (58%), Positives = 41/50 (82%)
Frame = -1
Query: 562 LDDLSAICAAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRTKRRT 413
L L +C AMEGV+V+NGLECK++C+S KI+YVLDT+D+F R + K++T
Sbjct: 1248 LTGLYDLCKAMEGVEVVNGLECKMSCSSYKIAYVLDTEDYFHRKKKKKKT 1297
>ref|NP_177163.1| hypothetical protein; protein id: At1g70060.1 [Arabidopsis thaliana]
Length = 1386
Score = 57.8 bits (138), Expect = 1e-07
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 9/74 (12%)
Frame = -1
Query: 544 ICAAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRTKR---------RTPSATTTS 392
+C E VK+INGLECKI C+SSK+SYVLDT+D R + ++ S + S
Sbjct: 1311 LCTTDE-VKIINGLECKITCSSSKVSYVLDTEDVLHRAKRRKLLNQSGLPLAHDSVCSGS 1369
Query: 391 RSRKDREERYRRLL 350
R+ R +RY++LL
Sbjct: 1370 LIRQRRTQRYQKLL 1383
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,312,986
Number of Sequences: 1393205
Number of extensions: 10696142
Number of successful extensions: 33305
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 32427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33289
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
