Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000195A_C02 KMC000195A_c02
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN62336.1|AF506028_3 CTV.2 [Poncirus trifoliata] 167 8e-41
ref|NP_563981.1| expressed protein; protein id: At1g15750.1 [Ara... 157 1e-37
pir||G86291 F7H2.9 protein - Arabidopsis thaliana gi|8927654|gb|... 157 1e-37
ref|NP_178164.1| unknown protein; protein id: At1g80490.1 [Arabi... 153 2e-36
dbj|BAC57818.1| P0577B11.15 [Oryza sativa (japonica cultivar-gro... 119 3e-26
>gb|AAN62336.1|AF506028_3 CTV.2 [Poncirus trifoliata]
Length = 1127
Score = 167 bits (424), Expect = 8e-41
Identities = 79/104 (75%), Positives = 91/104 (86%), Gaps = 2/104 (1%)
Frame = -2
Query: 633 IYASFLDATICVFSASNLRLRCRINPSAYLPSSVSSNVQPLVIAAHPQEPNQFATGLSDG 454
+YA FLDAT+CVFSA+NL+LRCRINPSAYLP+ VSSNV PLVIAAHPQEPN+FA GLSDG
Sbjct: 1024 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG 1083
Query: 453 TVHVFEPLESDGKWGVPPPIENGSASNVAAAS--GGPSSEQAQR 328
VHVFEPLES+GKWGVPPP++NGS S++ A GG S+QAQR
Sbjct: 1084 GVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1127
>ref|NP_563981.1| expressed protein; protein id: At1g15750.1 [Arabidopsis thaliana]
gi|15028127|gb|AAK76687.1| unknown protein [Arabidopsis
thaliana] gi|23296857|gb|AAN13188.1| unknown protein
[Arabidopsis thaliana]
Length = 1131
Score = 157 bits (396), Expect = 1e-37
Identities = 76/105 (72%), Positives = 89/105 (84%), Gaps = 3/105 (2%)
Frame = -2
Query: 633 IYASFLDATICVFSASNLRLRCRINPSAYLPSSVS-SNVQPLVIAAHPQEPNQFATGLSD 457
+YASF+DAT+CVFS++NLRLRCR+NPSAYLP+S+S SNV PLVIAAHPQEPN FA GLSD
Sbjct: 1027 VYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSD 1086
Query: 456 GTVHVFEPLESDGKWGVPPPIENGSASN--VAAASGGPSSEQAQR 328
G VH+FEPLES+GKWGV PP ENGSAS A + G +S+Q QR
Sbjct: 1087 GGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131
>pir||G86291 F7H2.9 protein - Arabidopsis thaliana
gi|8927654|gb|AAF82145.1|AC034256_9 Strong similarity to
an unknown protein T21F11.18 gi|6730738 from Arabidopsis
thaliana BAC T21F11 gb|AC018849 and contains multiple WD
PF|00400 domains. ESTs gb|Z34157, gb|AA006273,
gb|AA605431, gb|W43588, gb|W43605, gb|Z34559, gb|R90037,
gb|AI994125 come from this gene
Length = 1153
Score = 157 bits (396), Expect = 1e-37
Identities = 76/105 (72%), Positives = 89/105 (84%), Gaps = 3/105 (2%)
Frame = -2
Query: 633 IYASFLDATICVFSASNLRLRCRINPSAYLPSSVS-SNVQPLVIAAHPQEPNQFATGLSD 457
+YASF+DAT+CVFS++NLRLRCR+NPSAYLP+S+S SNV PLVIAAHPQEPN FA GLSD
Sbjct: 1049 VYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSD 1108
Query: 456 GTVHVFEPLESDGKWGVPPPIENGSASN--VAAASGGPSSEQAQR 328
G VH+FEPLES+GKWGV PP ENGSAS A + G +S+Q QR
Sbjct: 1109 GGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1153
>ref|NP_178164.1| unknown protein; protein id: At1g80490.1 [Arabidopsis thaliana]
gi|25406669|pir||G96836 unknown protein T21F11.18
[imported] - Arabidopsis thaliana
gi|6730738|gb|AAF27128.1|AC018849_16 unknown protein;
52184-57536 [Arabidopsis thaliana]
Length = 1073
Score = 153 bits (387), Expect = 2e-36
Identities = 77/105 (73%), Positives = 88/105 (83%), Gaps = 3/105 (2%)
Frame = -2
Query: 633 IYASFLDATICVFSASNLRLRCRINPSAYLPSSVS-SNVQPLVIAAHPQEPNQFATGLSD 457
IY SF+DATICVFS++NLRLRCR+NPSAYLP+S+S SNV PLVIAAHPQE N FA GLSD
Sbjct: 969 IYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSD 1028
Query: 456 GTVHVFEPLESDGKWGVPPPIENGSASNVAA--ASGGPSSEQAQR 328
G VH+FEPLES+GKWGV PP ENGSAS V A + G +S+Q QR
Sbjct: 1029 GGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1073
>dbj|BAC57818.1| P0577B11.15 [Oryza sativa (japonica cultivar-group)]
Length = 1133
Score = 119 bits (299), Expect = 3e-26
Identities = 58/93 (62%), Positives = 70/93 (74%), Gaps = 2/93 (2%)
Frame = -2
Query: 633 IYASFLDATICVFSASNLRLRCRINPSAYLPSSVSS--NVQPLVIAAHPQEPNQFATGLS 460
IYA F D I VF A +LRLRCRI PSAY+P S+SS +V P+V+AAHP EPNQ A G+S
Sbjct: 1032 IYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSMSSGGSVYPMVVAAHPLEPNQIAVGMS 1091
Query: 459 DGTVHVFEPLESDGKWGVPPPIENGSASNVAAA 361
DG VHV EPL+SD KWGV PP +NG+ ++AA
Sbjct: 1092 DGAVHVVEPLDSDPKWGVAPPQDNGTHPTISAA 1124
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,541,197
Number of Sequences: 1393205
Number of extensions: 11456596
Number of successful extensions: 29652
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29585
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
