Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000192A_C01 KMC000192A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA13222.1| ebiP3582 [Anopheles gambiae str. PEST] 33 3.0
gb|EAA42154.1| GLP_480_52619_54376 [Giardia lamblia ATCC 50803] 32 3.9
ref|NP_477864.1| wsv342 [shrimp white spot syndrome virus] gi|15... 32 6.7
>gb|EAA13222.1| ebiP3582 [Anopheles gambiae str. PEST]
Length = 612
Score = 32.7 bits (73), Expect = 3.0
Identities = 24/102 (23%), Positives = 41/102 (39%), Gaps = 2/102 (1%)
Frame = +3
Query: 63 YAKRTSSKVKAIFGYSTKSLCYQNLNGIILASLGFYLSQAPK*K*SFDATNHKNRINGEE 242
Y + S+ AI G LC N+ I+ +S F + + T R N
Sbjct: 147 YMGKISTIFYAILGIPLMLLCLSNIGDIMASSFRFLYWRVC----CYVCTREPKRSNSRR 202
Query: 243 KKTL--T*REEIKSEDRHRTDAPRFKEGLRFEYCTYRTKKTR 362
++ T R+ S H+ ++ +FK + +C +TK R
Sbjct: 203 SRSSRGTVRQGDSSSPSHQKESSKFKPAQNYSFCHCKTKGNR 244
>gb|EAA42154.1| GLP_480_52619_54376 [Giardia lamblia ATCC 50803]
Length = 585
Score = 32.3 bits (72), Expect = 3.9
Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Frame = +3
Query: 42 KLHWNILYAKRTSSKVKAIFGYSTKSLCYQNLNGIILASLGFYLSQAPK*K*SFDATNHK 221
++ W +L+ RT + VKAI G L +IL + ++S+ AT++
Sbjct: 322 RMDWRLLHQNRTFAYVKAILGVGCIDLISSLSGTVILGIVSTFVSKL--------ATDYA 373
Query: 222 NR-INGEEKKT 251
NR NG EK+T
Sbjct: 374 NRNPNGNEKQT 384
>ref|NP_477864.1| wsv342 [shrimp white spot syndrome virus]
gi|15021556|gb|AAK77833.1|AF369029_164 ORF164 [shrimp
white spot syndrome virus] gi|17016738|gb|AAL33344.1|
wsv342 [shrimp white spot syndrome virus]
gi|19481990|gb|AAL89266.1| WSSV398 [shrimp white spot
syndrome virus]
Length = 100
Score = 31.6 bits (70), Expect = 6.7
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +2
Query: 128 PKLEWHHPCLLGLLFVTSTQMKMKLRCHKSQKQDKRGGEKDPNLKRRNQK 277
PK+ P + ++ VT+T + + Q QD++GGEK+ ++RR +K
Sbjct: 33 PKIVLRIPKIEEVISVTTTNTTSPVTEPQFQFQDQKGGEKEVGVRRRRRK 82
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,698,700
Number of Sequences: 1393205
Number of extensions: 8735538
Number of successful extensions: 17151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17147
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
