Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000184A_C01 KMC000184A_c01
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65385.1| unknown [Arabidopsis thaliana] 142 6e-33
ref|NP_191006.2| auxin-regulated protein; This gene structure is... 142 6e-33
ref|NP_191005.1| putative protein [Arabidopsis thaliana] gi|1135... 89 8e-17
gb|AAK62425.1|AF386980_1 Unknown protein [Arabidopsis thaliana] 85 9e-16
dbj|BAC16724.1| MCM(minichromosome maintenance )3-associated pro... 51 1e-05
>gb|AAM65385.1| unknown [Arabidopsis thaliana]
Length = 407
Score = 142 bits (357), Expect = 6e-33
Identities = 66/128 (51%), Positives = 89/128 (68%)
Frame = -1
Query: 722 KEMCFARRILRSFRLGNYKDFFCTAPAQATYLQYCIMEPYINEVRALALSCINFGSYKLH 543
KE+CF R +LR +R+GNYK+F ++ATYLQYCI E +I E+R +A+ IN YKL
Sbjct: 280 KEICFVRNLLRLYRMGNYKNFLSRTASEATYLQYCISEHHIREMRLVAVQYINNVCYKLQ 339
Query: 542 PYPLFDLSKHLMIKESDLESLCNSCGLETCTDESGNKLLPTKQSTFSHPKGGFQSYSFLG 363
PYPL LS++L +KE D+ESLC+ CGLETCTD G +LP KQSTF P+ F+ Y +G
Sbjct: 340 PYPLLRLSQNLKMKELDVESLCHECGLETCTDPDGFTVLPVKQSTFRSPEDKFKVYDLIG 399
Query: 362 LQEYEGQI 339
++ + I
Sbjct: 400 IERIKMSI 407
>ref|NP_191006.2| auxin-regulated protein; This gene structure is inaccurate, likely
due to discrepancies within overlapping bac sequences.
This will be resolved asap. In the meantime, an either
full or partial translation is provided. [Arabidopsis
thaliana]
Length = 406
Score = 142 bits (357), Expect = 6e-33
Identities = 66/128 (51%), Positives = 89/128 (68%)
Frame = -1
Query: 722 KEMCFARRILRSFRLGNYKDFFCTAPAQATYLQYCIMEPYINEVRALALSCINFGSYKLH 543
KE+CF R +LR +R+GNYK+F ++ATYLQYCI E +I E+R +A+ IN YKL
Sbjct: 279 KEICFVRNLLRLYRMGNYKNFLSRTASEATYLQYCISEHHIREMRLVAVQYINNVCYKLQ 338
Query: 542 PYPLFDLSKHLMIKESDLESLCNSCGLETCTDESGNKLLPTKQSTFSHPKGGFQSYSFLG 363
PYPL LS++L +KE D+ESLC+ CGLETCTD G +LP KQSTF P+ F+ Y +G
Sbjct: 339 PYPLLRLSQNLKMKELDVESLCHECGLETCTDPDGFTVLPVKQSTFRSPEDKFKVYDLIG 398
Query: 362 LQEYEGQI 339
++ + I
Sbjct: 399 IERIKMSI 406
>ref|NP_191005.1| putative protein [Arabidopsis thaliana] gi|11357991|pir||T47596
hypothetical protein T12E18.60 - Arabidopsis thaliana
gi|7288015|emb|CAB81802.1| putative protein [Arabidopsis
thaliana]
Length = 85
Score = 88.6 bits (218), Expect = 8e-17
Identities = 42/85 (49%), Positives = 57/85 (66%)
Frame = -1
Query: 593 VRALALSCINFGSYKLHPYPLFDLSKHLMIKESDLESLCNSCGLETCTDESGNKLLPTKQ 414
+R +A+ IN YKL PYPL LS++L +KE D+ESLC+ CGLETCTD G +LP KQ
Sbjct: 1 MRLVAVQYINNVCYKLQPYPLLRLSQNLKMKELDVESLCHECGLETCTDPDGFTVLPVKQ 60
Query: 413 STFSHPKGGFQSYSFLGLQEYEGQI 339
STF P+ F+ Y +G++ + I
Sbjct: 61 STFRSPEDKFKVYDLIGIERIKMSI 85
>gb|AAK62425.1|AF386980_1 Unknown protein [Arabidopsis thaliana]
Length = 383
Score = 85.1 bits (209), Expect = 9e-16
Identities = 39/74 (52%), Positives = 53/74 (70%)
Frame = -1
Query: 722 KEMCFARRILRSFRLGNYKDFFCTAPAQATYLQYCIMEPYINEVRALALSCINFGSYKLH 543
KE+CF R +LR +R+GNYK+F ++ATYLQYCI E +I E+R +A+ IN YKL
Sbjct: 279 KEICFVRNLLRLYRMGNYKNFLSRTASEATYLQYCISEHHIREMRLVAVQYINNVCYKLQ 338
Query: 542 PYPLFDLSKHLMIK 501
PYPL LS++L +K
Sbjct: 339 PYPLLRLSQNLKMK 352
>dbj|BAC16724.1| MCM(minichromosome maintenance )3-associated protein-like (GANP
protein-like) [Oryza sativa (japonica cultivar-group)]
Length = 1791
Score = 51.2 bits (121), Expect = 1e-05
Identities = 27/80 (33%), Positives = 47/80 (58%)
Frame = -1
Query: 719 EMCFARRILRSFRLGNYKDFFCTAPAQATYLQYCIMEPYINEVRALALSCINFGSYKLHP 540
++ FAR + R+ R+GN+ FF A +ATYLQ C+M + ++R AL+ ++ G
Sbjct: 771 DILFAREVARACRMGNFIAFFRLA-RKATYLQACLMHAHFAKLRRQALASLHSGLQNTQG 829
Query: 539 YPLFDLSKHLMIKESDLESL 480
P+ + L +++ D+ESL
Sbjct: 830 IPISQAVEWLAMEDEDIESL 849
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,626,426
Number of Sequences: 1393205
Number of extensions: 12812998
Number of successful extensions: 27181
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 24622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26630
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
