Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000183A_C01 KMC000183A_c01
(896 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199369.2| putative protein; protein id: At5g45560.1, supp... 230 2e-59
dbj|BAC22213.1| hypothetical protein~similar to Arabidopsis thal... 206 5e-52
gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica... 153 4e-36
ref|NP_180399.1| unknown protein; protein id: At2g28320.1 [Arabi... 150 2e-35
gb|AAM64360.1| unknown [Arabidopsis thaliana] 149 7e-35
>ref|NP_199369.2| putative protein; protein id: At5g45560.1, supported by cDNA:
gi_18086358 [Arabidopsis thaliana]
gi|18086359|gb|AAL57642.1| AT5g45560/MFC19_23
[Arabidopsis thaliana]
Length = 719
Score = 230 bits (587), Expect = 2e-59
Identities = 114/127 (89%), Positives = 120/127 (93%)
Frame = -1
Query: 896 PGSLLQRFVDGDDEFRNSRFKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLE 717
PGSL QRFVDGDDEFRNSR KLIP VPKGSWIVRQSVGSTPCLLGKAVDCNYIRGP YLE
Sbjct: 593 PGSLFQRFVDGDDEFRNSRLKLIPLVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPTYLE 652
Query: 716 IDVDIGSSTVANGVLGLVVGVITTLVVDMAFLVQANTPDELPERLIGAVRVSHLELKSAI 537
IDVDIGSSTVANGVLGLV+GVIT+LVV+MAFLVQANTP+ELPERLIGAVRVSH+EL SAI
Sbjct: 653 IDVDIGSSTVANGVLGLVIGVITSLVVEMAFLVQANTPEELPERLIGAVRVSHVELSSAI 712
Query: 536 VPKLEPD 516
VP L+ D
Sbjct: 713 VPNLDSD 719
>dbj|BAC22213.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 5,
At5g45560 [Oryza sativa (japonica cultivar-group)]
Length = 674
Score = 206 bits (523), Expect = 5e-52
Identities = 99/124 (79%), Positives = 114/124 (91%)
Frame = -1
Query: 893 GSLLQRFVDGDDEFRNSRFKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEI 714
GSLLQRF DGDD+FRNSR KLIPSVPKGSWIVRQSVGSTPCLLGKAVDC+Y+RG +Y+E+
Sbjct: 550 GSLLQRFADGDDDFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCSYMRGQEYIEV 609
Query: 713 DVDIGSSTVANGVLGLVVGVITTLVVDMAFLVQANTPDELPERLIGAVRVSHLELKSAIV 534
DVDIGSS VANGVLGLV GV+TTL+VDMAFL+QANT DELPE+L+GA R+S++E SAIV
Sbjct: 610 DVDIGSSAVANGVLGLVFGVVTTLIVDMAFLIQANTYDELPEQLLGAARLSNIEPSSAIV 669
Query: 533 PKLE 522
P L+
Sbjct: 670 PVLD 673
>gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 773
Score = 153 bits (386), Expect = 4e-36
Identities = 72/117 (61%), Positives = 93/117 (78%)
Frame = -1
Query: 887 LLQRFVDGDDEFRNSRFKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDV 708
LL+RFV+GDD FRNSRFKLIP + KGSWIV+QSVG CL+G+A++ NY RG YLE+ V
Sbjct: 652 LLERFVNGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEINYFRGSNYLELGV 711
Query: 707 DIGSSTVANGVLGLVVGVITTLVVDMAFLVQANTPDELPERLIGAVRVSHLELKSAI 537
DIGSSTVA GV+ LV+G + LV++MAFLVQ NT +ELPE L+G R+++L+ A+
Sbjct: 712 DIGSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKAV 768
>ref|NP_180399.1| unknown protein; protein id: At2g28320.1 [Arabidopsis thaliana]
gi|25407975|pir||D84683 hypothetical protein At2g28320
[imported] - Arabidopsis thaliana
gi|4432844|gb|AAD20693.1| unknown protein [Arabidopsis
thaliana]
Length = 446
Score = 150 bits (380), Expect = 2e-35
Identities = 71/117 (60%), Positives = 91/117 (77%)
Frame = -1
Query: 887 LLQRFVDGDDEFRNSRFKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDV 708
LL FV+GDD +RNSRFKLIP + KGSWIV+QSVG CL+G+A++ NY RG Y+E+ V
Sbjct: 326 LLVSFVNGDDAYRNSRFKLIPYISKGSWIVKQSVGKKACLIGQALEINYFRGKNYIELGV 385
Query: 707 DIGSSTVANGVLGLVVGVITTLVVDMAFLVQANTPDELPERLIGAVRVSHLELKSAI 537
DIGSSTVA GV+ LV+G + LV++MAFL+QANT +ELPE L+G R +HL+ AI
Sbjct: 386 DIGSSTVARGVVSLVLGYLNKLVIEMAFLIQANTEEELPEYLLGTCRFNHLDASKAI 442
>gb|AAM64360.1| unknown [Arabidopsis thaliana]
Length = 302
Score = 149 bits (375), Expect = 7e-35
Identities = 70/126 (55%), Positives = 92/126 (72%), Gaps = 1/126 (0%)
Frame = -1
Query: 893 GSLLQRFVDGDDEFRNSRFKLIPSVPKGSWIVRQSVGS-TPCLLGKAVDCNYIRGPKYLE 717
GSLL RF++GDD FRN RFK++ + KG W+V+ +VG+ + CLLGKA+ CNY RGP Y E
Sbjct: 153 GSLLHRFINGDDAFRNQRFKIVNRIVKGPWVVKAAVGNYSACLLGKALTCNYHRGPNYFE 212
Query: 716 IDVDIGSSTVANGVLGLVVGVITTLVVDMAFLVQANTPDELPERLIGAVRVSHLELKSAI 537
IDVDI SS +A +L L +G +T++ +DM FL +A T +ELPERLIGAVRV +E+ SA
Sbjct: 213 IDVDISSSAIATAILRLALGYVTSVTIDMGFLAEAQTEEELPERLIGAVRVCQMEMSSAF 272
Query: 536 VPKLEP 519
V P
Sbjct: 273 VVDAPP 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 779,775,633
Number of Sequences: 1393205
Number of extensions: 18106694
Number of successful extensions: 57082
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 49529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56108
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 49054409712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
