Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000172A_C01 KMC000172A_c01
(748 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67418.1|AF492655_1 receptor-like kinase SYMRK [Lotus japon... 271 9e-72
emb|CAD10810.1| nodulation receptor kinase [Medicago truncatula] 252 3e-66
emb|CAD10808.1| nodulation receptor kinase [Medicago truncatula]... 252 3e-66
gb|AAM76685.1|AF491998_1 SYMRK; MtSYMRK [Medicago truncatula] 252 3e-66
emb|CAD10813.1| nodulation receptor kinase [Pisum sativum] 251 6e-66
>gb|AAM67418.1|AF492655_1 receptor-like kinase SYMRK [Lotus japonicus]
Length = 923
Score = 271 bits (692), Expect = 9e-72
Identities = 135/135 (100%), Positives = 135/135 (100%)
Frame = -1
Query: 748 EIVSGREPLNIKRPRTEWSLVEWATPYIRGSKVDEIVDPGIKGGYHAEAMWRVVEVALQC 569
EIVSGREPLNIKRPRTEWSLVEWATPYIRGSKVDEIVDPGIKGGYHAEAMWRVVEVALQC
Sbjct: 789 EIVSGREPLNIKRPRTEWSLVEWATPYIRGSKVDEIVDPGIKGGYHAEAMWRVVEVALQC 848
Query: 568 LEPFSTYRPSMVAIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTTSTA 389
LEPFSTYRPSMVAIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTTSTA
Sbjct: 849 LEPFSTYRPSMVAIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTTSTA 908
Query: 388 ESTITTQSLSHPQPR 344
ESTITTQSLSHPQPR
Sbjct: 909 ESTITTQSLSHPQPR 923
>emb|CAD10810.1| nodulation receptor kinase [Medicago truncatula]
Length = 901
Score = 252 bits (644), Expect = 3e-66
Identities = 124/135 (91%), Positives = 129/135 (94%)
Frame = -1
Query: 748 EIVSGREPLNIKRPRTEWSLVEWATPYIRGSKVDEIVDPGIKGGYHAEAMWRVVEVALQC 569
EIVSGREPLNIKRPR EWSLVEWA PYIR SKVDEIVDPGIKGGYHAEA+WRVVEVALQC
Sbjct: 767 EIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQC 826
Query: 568 LEPFSTYRPSMVAIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTTSTA 389
LEP+STYRP MV IVRELEDALIIENNASEYMKSIDSLGGSNRYSIV++KR LPSTTSTA
Sbjct: 827 LEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPSTTSTA 886
Query: 388 ESTITTQSLSHPQPR 344
ESTITTQ+LSHPQPR
Sbjct: 887 ESTITTQTLSHPQPR 901
>emb|CAD10808.1| nodulation receptor kinase [Medicago truncatula]
gi|21698785|emb|CAD10809.1| nodulation receptor kinase
[Medicago truncatula]
Length = 924
Score = 252 bits (644), Expect = 3e-66
Identities = 124/135 (91%), Positives = 129/135 (94%)
Frame = -1
Query: 748 EIVSGREPLNIKRPRTEWSLVEWATPYIRGSKVDEIVDPGIKGGYHAEAMWRVVEVALQC 569
EIVSGREPLNIKRPR EWSLVEWA PYIR SKVDEIVDPGIKGGYHAEA+WRVVEVALQC
Sbjct: 790 EIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQC 849
Query: 568 LEPFSTYRPSMVAIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTTSTA 389
LEP+STYRP MV IVRELEDALIIENNASEYMKSIDSLGGSNRYSIV++KR LPSTTSTA
Sbjct: 850 LEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPSTTSTA 909
Query: 388 ESTITTQSLSHPQPR 344
ESTITTQ+LSHPQPR
Sbjct: 910 ESTITTQTLSHPQPR 924
>gb|AAM76685.1|AF491998_1 SYMRK; MtSYMRK [Medicago truncatula]
Length = 925
Score = 252 bits (644), Expect = 3e-66
Identities = 124/135 (91%), Positives = 129/135 (94%)
Frame = -1
Query: 748 EIVSGREPLNIKRPRTEWSLVEWATPYIRGSKVDEIVDPGIKGGYHAEAMWRVVEVALQC 569
EIVSGREPLNIKRPR EWSLVEWA PYIR SKVDEIVDPGIKGGYHAEA+WRVVEVALQC
Sbjct: 791 EIVSGREPLNIKRPRIEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQC 850
Query: 568 LEPFSTYRPSMVAIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTTSTA 389
LEP+STYRP MV IVRELEDALIIENNASEYMKSIDSLGGSNRYSIV++KR LPSTTSTA
Sbjct: 851 LEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPSTTSTA 910
Query: 388 ESTITTQSLSHPQPR 344
ESTITTQ+LSHPQPR
Sbjct: 911 ESTITTQTLSHPQPR 925
>emb|CAD10813.1| nodulation receptor kinase [Pisum sativum]
Length = 923
Score = 251 bits (642), Expect = 6e-66
Identities = 123/135 (91%), Positives = 129/135 (95%)
Frame = -1
Query: 748 EIVSGREPLNIKRPRTEWSLVEWATPYIRGSKVDEIVDPGIKGGYHAEAMWRVVEVALQC 569
EIVSGREPLNIKRPR EWSLVEWA PYIR SKVDEIVDPGIKGGYHAEA+WRVVEVALQC
Sbjct: 789 EIVSGREPLNIKRPRVEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQC 848
Query: 568 LEPFSTYRPSMVAIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVIEKRVLPSTTSTA 389
LEP+STYRP MV IVRELEDALIIENNASEYMKSIDSLGGSNRYSIV++KR LPSTTSTA
Sbjct: 849 LEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPSTTSTA 908
Query: 388 ESTITTQSLSHPQPR 344
ESTITTQ++SHPQPR
Sbjct: 909 ESTITTQNVSHPQPR 923
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 664,851,645
Number of Sequences: 1393205
Number of extensions: 14541793
Number of successful extensions: 34314
Number of sequences better than 10.0: 844
Number of HSP's better than 10.0 without gapping: 32953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34104
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
