Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000171A_C01 KMC000171A_c01
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P33278|SUI1_ORYSA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (GO... 209 3e-53
ref|NP_200287.1| protein translation factor Sui1 homolog (sp P41... 209 3e-53
sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog gi|... 208 6e-53
ref|NP_194443.1| translation initiation factor; protein id: At4g... 207 1e-52
sp|P56330|SUI1_MAIZE PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (GO... 207 1e-52
>sp|P33278|SUI1_ORYSA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (GOS2 PROTEIN)
gi|100682|pir||S21636 GOS2 protein - rice
gi|20238|emb|CAA36190.1| GOS2 [Oryza sativa]
gi|3789950|gb|AAC67556.1| translation initiation factor
[Oryza sativa] gi|14194275|gb|AAK56324.1|AF380357_1
translational initiation factor eIF1 [Porteresia
coarctata] gi|27261027|dbj|BAC45143.1| translational
initiation factor eIF1 [Oryza sativa (japonica
cultivar-group)]
Length = 115
Score = 209 bits (532), Expect = 3e-53
Identities = 103/116 (88%), Positives = 110/116 (94%)
Frame = -1
Query: 611 MSELDAQIPTAFDPFAEANVDESGAGGAGTKDYVHIRVQQRNGRKSLTTVQGLKKEFSYN 432
MS+LD QIPTAFDPFAEAN +SGA AG+KDYVH+R+QQRNGRKSLTTVQGLKKEFSYN
Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAA-AGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYN 59
Query: 431 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDNIKIHGF 264
KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKK++IKIHGF
Sbjct: 60 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>ref|NP_200287.1| protein translation factor Sui1 homolog (sp P41568); protein id:
At5g54760.1 [Arabidopsis thaliana]
gi|9758256|dbj|BAB08755.1| protein translation factor
Sui1 homolog [Arabidopsis thaliana]
gi|29028784|gb|AAO64771.1| At5g54760 [Arabidopsis
thaliana]
Length = 113
Score = 209 bits (531), Expect = 3e-53
Identities = 103/116 (88%), Positives = 111/116 (94%)
Frame = -1
Query: 611 MSELDAQIPTAFDPFAEANVDESGAGGAGTKDYVHIRVQQRNGRKSLTTVQGLKKEFSYN 432
MSELD+Q+PTAFDPFA+ANV++SGAG TK+YVHIRVQQRNGRKSLTTVQGLKKE+SY
Sbjct: 1 MSELDSQVPTAFDPFADANVEDSGAG---TKEYVHIRVQQRNGRKSLTTVQGLKKEYSYT 57
Query: 431 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDNIKIHGF 264
KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKKDNIKIHGF
Sbjct: 58 KILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>sp|Q9SM41|SUI1_SPOST Protein translation factor SUI1 homolog gi|6478142|emb|CAB61837.1|
putative translation initiation factor eIF-1 [Sporobolus
stapfianus]
Length = 115
Score = 208 bits (529), Expect = 6e-53
Identities = 102/116 (87%), Positives = 110/116 (93%)
Frame = -1
Query: 611 MSELDAQIPTAFDPFAEANVDESGAGGAGTKDYVHIRVQQRNGRKSLTTVQGLKKEFSYN 432
MS+LD QIPTAFDPF+EAN +SGA AG+KDYVH+R+QQRNGRKSLTTVQGLKKEFSYN
Sbjct: 1 MSDLDIQIPTAFDPFSEANAGDSGAA-AGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYN 59
Query: 431 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDNIKIHGF 264
KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKK++IKIHGF
Sbjct: 60 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>ref|NP_194443.1| translation initiation factor; protein id: At4g27130.1, supported
by cDNA: 5206., supported by cDNA: gi_14335109
[Arabidopsis thaliana] gi|2507421|sp|P41568|SU11_ARATH
Protein translation factor SUI1 homolog 1
gi|7488392|pir||T06043 translation initiation factor
eIF-2A - Arabidopsis thaliana gi|1800277|gb|AAB68033.1|
translation initiation factor [Arabidopsis thaliana]
gi|4490709|emb|CAB38843.1| translation initiation factor
[Arabidopsis thaliana] gi|7269566|emb|CAB79568.1|
translation initiation factor [Arabidopsis thaliana]
gi|14335110|gb|AAK59834.1| AT4g27130/T24A18_80
[Arabidopsis thaliana] gi|16974517|gb|AAL31168.1|
AT4g27130/T24A18_80 [Arabidopsis thaliana]
gi|21593860|gb|AAM65827.1| translation initiation factor
[Arabidopsis thaliana]
Length = 113
Score = 207 bits (527), Expect = 1e-52
Identities = 102/116 (87%), Positives = 110/116 (93%)
Frame = -1
Query: 611 MSELDAQIPTAFDPFAEANVDESGAGGAGTKDYVHIRVQQRNGRKSLTTVQGLKKEFSYN 432
MSELD+Q+PTAFDPFA+AN ++SGAG TK+YVHIRVQQRNGRKSLTTVQGLKKE+SY
Sbjct: 1 MSELDSQVPTAFDPFADANAEDSGAG---TKEYVHIRVQQRNGRKSLTTVQGLKKEYSYT 57
Query: 431 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDNIKIHGF 264
KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKKDNIKIHGF
Sbjct: 58 KILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>sp|P56330|SUI1_MAIZE PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (GOS2 PROTEIN)
gi|2668740|gb|AAB88615.1| translation initiation factor;
GOS2 [Zea mays]
Length = 115
Score = 207 bits (527), Expect = 1e-52
Identities = 102/116 (87%), Positives = 110/116 (93%)
Frame = -1
Query: 611 MSELDAQIPTAFDPFAEANVDESGAGGAGTKDYVHIRVQQRNGRKSLTTVQGLKKEFSYN 432
MS+LD QIPTAFDPFAEAN +SGA AG+KDYVH+R+QQRNGRKSLTTVQGLKKEFSY+
Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAA-AGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYS 59
Query: 431 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDNIKIHGF 264
KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKK++IKIHGF
Sbjct: 60 KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,939,427
Number of Sequences: 1393205
Number of extensions: 11710147
Number of successful extensions: 31057
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 29402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30964
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
