Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000163A_C01 KMC000163A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF24949.1|AC012375_12 T22C5.20 [Arabidopsis thaliana] 33 3.7
ref|NP_174096.1| hypothetical protein; protein id: At1g27750.1 [... 33 3.7
sp|P07665|SRYB_DROME Serendipity locus beta protein gi|85141|pir... 32 6.4
ref|NP_524579.1| Serendipity beta CG7938-PA gi|7301890|gb|AAF569... 32 6.4
prf||2009349A serendipity beta protein 32 6.4
>gb|AAF24949.1|AC012375_12 T22C5.20 [Arabidopsis thaliana]
Length = 1840
Score = 32.7 bits (73), Expect = 3.7
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -3
Query: 605 GRGXGRSHHYRKDQAMKKHFSGLGGF 528
G G GR+H++ KD+AMKKH + + GF
Sbjct: 1816 GGGGGRNHNH-KDRAMKKHIASVSGF 1840
>ref|NP_174096.1| hypothetical protein; protein id: At1g27750.1 [Arabidopsis thaliana]
Length = 1975
Score = 32.7 bits (73), Expect = 3.7
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -3
Query: 605 GRGXGRSHHYRKDQAMKKHFSGLGGF 528
G G GR+H++ KD+AMKKH + + GF
Sbjct: 1951 GGGGGRNHNH-KDRAMKKHIASVSGF 1975
>sp|P07665|SRYB_DROME Serendipity locus beta protein gi|85141|pir||A23351 serendipity
(sry) locus beta protein - fruit fly (Drosophila
melanogaster) gi|8655|emb|CAA26896.1| beta protein
[Drosophila melanogaster]
Length = 351
Score = 32.0 bits (71), Expect = 6.4
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Frame = +3
Query: 384 LMHHIELQCCQKLG-FTCRDTSQKVTD------HMQMYGNSTSMKCMYVDSLMYLKTTQS 542
L HI+ CQK TC KV D HM ++ T ++C Y D K
Sbjct: 181 LERHIKADTCQKSEQATCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNVL 240
Query: 543 REMLLH 560
R M +H
Sbjct: 241 RHMEVH 246
>ref|NP_524579.1| Serendipity beta CG7938-PA gi|7301890|gb|AAF56998.1| CG7938-PA
[Drosophila melanogaster] gi|21391994|gb|AAM48351.1|
LD08529p [Drosophila melanogaster]
Length = 356
Score = 32.0 bits (71), Expect = 6.4
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Frame = +3
Query: 384 LMHHIELQCCQKLG-FTCRDTSQKVTD------HMQMYGNSTSMKCMYVDSLMYLKTTQS 542
L HI+ CQK TC KV D HM ++ T ++C Y D K
Sbjct: 186 LERHIKADTCQKSEQATCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNVL 245
Query: 543 REMLLH 560
R M +H
Sbjct: 246 RHMEVH 251
>prf||2009349A serendipity beta protein
Length = 356
Score = 32.0 bits (71), Expect = 6.4
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Frame = +3
Query: 384 LMHHIELQCCQKLG-FTCRDTSQKVTD------HMQMYGNSTSMKCMYVDSLMYLKTTQS 542
L HI+ CQK TC KV D HM ++ T ++C Y D K
Sbjct: 186 LERHIKADTCQKSEQATCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNLV 245
Query: 543 REMLLH 560
R M +H
Sbjct: 246 RHMEVH 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,478,088
Number of Sequences: 1393205
Number of extensions: 12040334
Number of successful extensions: 26340
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26337
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
