Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000156A_C01 KMC000156A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199127.1| putative protein; protein id: At5g43130.1 [Arab... 69 3e-11
emb|CAC39055.1| putative protein [Oryza sativa] 63 3e-09
gb|AAO23083.1| unknown protein [Oryza sativa (japonica cultivar-... 60 2e-08
pir||A86402 protein T22C5.17 [imported] - Arabidopsis thaliana g... 54 1e-06
ref|NP_174093.1| hypothetical protein; protein id: At1g27720.1 [... 54 1e-06
>ref|NP_199127.1| putative protein; protein id: At5g43130.1 [Arabidopsis thaliana]
gi|9757840|dbj|BAB08277.1|
gb|AAF24960.1~gene_id:MMG4.16~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 689
Score = 69.3 bits (168), Expect = 3e-11
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = -1
Query: 558 SGSQPSNDVNPKSLSTSGRGTKDDPEGERKGSTAFLAASGSAGKH-GRNHAVASQARVAR 382
S S+ D N K+ S G+ +KD +G R+ SG+ G+ G+N + Q +V R
Sbjct: 609 SVSEAGKDGNQKTTSGGGKNSKDRQDGGRR-------FSGTGGRRVGKNQGSSLQPKVVR 661
Query: 381 SISVKDVIAVLEREPQMSKSPLVHRLYE 298
+ISVKDV+AVLEREPQMSKS L++RL +
Sbjct: 662 TISVKDVVAVLEREPQMSKSTLMYRLIQ 689
>emb|CAC39055.1| putative protein [Oryza sativa]
Length = 691
Score = 62.8 bits (151), Expect = 3e-09
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -1
Query: 588 QKREEAMDTSSGSQPSNDVNPKSLSTSGRGTKDDPEGERKGSTAFLAASGSAGKHGRNHA 409
+++ E +D ++ SQ +G+G D E ++ +A +G + GR
Sbjct: 589 RQKREGLDLAASSQRGT---ASRSHMAGKGPTDHHEASKRTHSAAFG-TGGMNRQGRGPF 644
Query: 408 VASQAR-VARSISVKDVIAVLEREPQMSKSPLVHRLYERIHSDA 280
AS + R+IS+KDVI VLEREPQM+KS L++RLYER+ D+
Sbjct: 645 AASHPKGPQRTISMKDVICVLEREPQMTKSRLIYRLYERLPGDS 688
>gb|AAO23083.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 755
Score = 60.1 bits (144), Expect = 2e-08
Identities = 38/99 (38%), Positives = 53/99 (53%)
Frame = -1
Query: 567 DTSSGSQPSNDVNPKSLSTSGRGTKDDPEGERKGSTAFLAASGSAGKHGRNHAVASQARV 388
D SSGS P N + S G+G+++ E E+ G +S +V
Sbjct: 673 DGSSGSMPGNMLPRTSSPKPGKGSREQQEIEKTGGVRR----------------SSHVKV 716
Query: 387 ARSISVKDVIAVLEREPQMSKSPLVHRLYERIHSDAPAE 271
RSI+VKDVIA LEREPQM KS L+ +LY R +++ A+
Sbjct: 717 TRSITVKDVIAALEREPQMLKSSLLFQLYGRSPAESSAK 755
>pir||A86402 protein T22C5.17 [imported] - Arabidopsis thaliana
gi|6693034|gb|AAF24960.1|AC012375_23 T22C5.17
[Arabidopsis thaliana]
Length = 697
Score = 54.3 bits (129), Expect = 1e-06
Identities = 26/37 (70%), Positives = 33/37 (88%)
Frame = -1
Query: 393 RVARSISVKDVIAVLEREPQMSKSPLVHRLYERIHSD 283
+V RSISVKDVIAV+E+EPQMS+S L++R+Y RI SD
Sbjct: 660 KVVRSISVKDVIAVVEKEPQMSRSTLLYRVYNRICSD 696
>ref|NP_174093.1| hypothetical protein; protein id: At1g27720.1 [Arabidopsis
thaliana]
Length = 617
Score = 54.3 bits (129), Expect = 1e-06
Identities = 26/37 (70%), Positives = 33/37 (88%)
Frame = -1
Query: 393 RVARSISVKDVIAVLEREPQMSKSPLVHRLYERIHSD 283
+V RSISVKDVIAV+E+EPQMS+S L++R+Y RI SD
Sbjct: 580 KVVRSISVKDVIAVVEKEPQMSRSTLLYRVYNRICSD 616
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,516,859
Number of Sequences: 1393205
Number of extensions: 10719180
Number of successful extensions: 30221
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 28800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30197
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
