Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000150A_C01 KMC000150A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186924.1| protein phosphatase 2C (PP2C); protein id: At3g... 59 4e-08
gb|AAL32574.1| putative protein phosphatase-2C (PP2C) [Arabidops... 59 4e-08
dbj|BAB84698.1| protein phosphatase 2C [Arabidopsis thaliana] 59 4e-08
gb|AAL83985.1| putative protein phosphatase 2C [Oryza sativa] 57 1e-07
ref|NP_198474.1| protein phosphatase 2C PP2C; protein id: At5g36... 52 4e-06
>ref|NP_186924.1| protein phosphatase 2C (PP2C); protein id: At3g02750.1, supported
by cDNA: gi_17064839 [Arabidopsis thaliana]
gi|6728987|gb|AAF26985.1|AC018363_30 putative protein
phosphatase-2C (PP2C) [Arabidopsis thaliana]
Length = 492
Score = 58.9 bits (141), Expect = 4e-08
Identities = 25/51 (49%), Positives = 39/51 (76%)
Frame = -3
Query: 582 TAARVLVETAAKXWRSKFPFCKVDDCAAVCLFLNSDSSDKLTQEAATDQLE 430
+AAR LVE+A + WR K+P KVDDCAAVCL+L+S +++ ++ ++ +LE
Sbjct: 361 SAARALVESAVRAWRYKYPTSKVDDCAAVCLYLDSSNTNAISTASSISKLE 411
>gb|AAL32574.1| putative protein phosphatase-2C (PP2C) [Arabidopsis thaliana]
Length = 492
Score = 58.9 bits (141), Expect = 4e-08
Identities = 25/51 (49%), Positives = 39/51 (76%)
Frame = -3
Query: 582 TAARVLVETAAKXWRSKFPFCKVDDCAAVCLFLNSDSSDKLTQEAATDQLE 430
+AAR LVE+A + WR K+P KVDDCAAVCL+L+S +++ ++ ++ +LE
Sbjct: 361 SAARALVESAVRAWRYKYPTSKVDDCAAVCLYLDSSNTNAISTASSISKLE 411
>dbj|BAB84698.1| protein phosphatase 2C [Arabidopsis thaliana]
Length = 302
Score = 58.9 bits (141), Expect = 4e-08
Identities = 25/51 (49%), Positives = 39/51 (76%)
Frame = -3
Query: 582 TAARVLVETAAKXWRSKFPFCKVDDCAAVCLFLNSDSSDKLTQEAATDQLE 430
+AAR LVE+A + WR K+P KVDDCAAVCL+L+S +++ ++ ++ +LE
Sbjct: 171 SAARALVESAVRAWRYKYPTSKVDDCAAVCLYLDSSNTNAISTASSISKLE 221
>gb|AAL83985.1| putative protein phosphatase 2C [Oryza sativa]
Length = 130
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = -3
Query: 582 TAARVLVETAAKXWRSKFPFCKVDDCAAVCLFLNSDSSDKLTQEAATD 439
+AAR+LVE+A + WR++FP K+DDCA VCLFL++D + + A D
Sbjct: 17 SAARLLVESAHRAWRARFPTSKIDDCAVVCLFLDTDELSETSSSMARD 64
>ref|NP_198474.1| protein phosphatase 2C PP2C; protein id: At5g36250.1, supported by
cDNA: gi_16974563 [Arabidopsis thaliana]
gi|9759038|dbj|BAB09365.1| protein phosphatase-2C
PP2C-like [Arabidopsis thaliana]
Length = 448
Score = 52.4 bits (124), Expect = 4e-06
Identities = 23/36 (63%), Positives = 27/36 (74%)
Frame = -3
Query: 582 TAARVLVETAAKXWRSKFPFCKVDDCAAVCLFLNSD 475
+A R LVE A + WR KFP KVDDCA VCLFL+S+
Sbjct: 352 SAGRALVEAAVRNWRWKFPTSKVDDCAVVCLFLDSE 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,958,367
Number of Sequences: 1393205
Number of extensions: 12474433
Number of successful extensions: 44647
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 38487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44051
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
