Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000145A_C03 KMC000145A_c03
(745 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02664.1| coatomer protein complex, beta prime; beta'-COP ... 162 4e-39
ref|NP_188219.1| putative coatomer complex subunit; protein id: ... 162 4e-39
ref|NP_175645.1| coatomer complex subunit, putative; protein id:... 158 7e-38
dbj|BAC42999.1| putative coatomer complex subunit [Arabidopsis t... 158 7e-38
gb|AAM53344.1| putative coatomer complex subunit [Arabidopsis th... 144 1e-33
>dbj|BAB02664.1| coatomer protein complex, beta prime; beta'-COP protein [Arabidopsis
thaliana]
Length = 911
Score = 162 bits (411), Expect = 4e-39
Identities = 79/128 (61%), Positives = 98/128 (75%)
Frame = -1
Query: 745 DPEEYPNLFEDXQVALAVESKSVETRGVYPPAEEYVNHAGKSHVTLVEAFRNMQIEGEQP 566
DPEEY NLFED QVAL+VE+ + ETRGVY AE Y +HA K +TLVEAFRN+Q+E E+
Sbjct: 784 DPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEES 843
Query: 565 LENGESSHELAEHNGEEDHTEEHEEQNGEEGSQEEGVVVDADSTDGAVLINGNEADEDWS 386
LENG HE+AE NG ++ + EEQ EE ++EEG VVDADSTDGAVL+NG+E +E+W
Sbjct: 844 LENGNIDHEVAEENGHVENEGDEEEQQEEEVNEEEG-VVDADSTDGAVLVNGSEGEEEWG 902
Query: 385 ANNKEDPS 362
NNK +PS
Sbjct: 903 TNNKGNPS 910
>ref|NP_188219.1| putative coatomer complex subunit; protein id: At3g15980.1
[Arabidopsis thaliana]
Length = 921
Score = 162 bits (411), Expect = 4e-39
Identities = 79/128 (61%), Positives = 98/128 (75%)
Frame = -1
Query: 745 DPEEYPNLFEDXQVALAVESKSVETRGVYPPAEEYVNHAGKSHVTLVEAFRNMQIEGEQP 566
DPEEY NLFED QVAL+VE+ + ETRGVY AE Y +HA K +TLVEAFRN+Q+E E+
Sbjct: 794 DPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEES 853
Query: 565 LENGESSHELAEHNGEEDHTEEHEEQNGEEGSQEEGVVVDADSTDGAVLINGNEADEDWS 386
LENG HE+AE NG ++ + EEQ EE ++EEG VVDADSTDGAVL+NG+E +E+W
Sbjct: 854 LENGNIDHEVAEENGHVENEGDEEEQQEEEVNEEEG-VVDADSTDGAVLVNGSEGEEEWG 912
Query: 385 ANNKEDPS 362
NNK +PS
Sbjct: 913 TNNKGNPS 920
>ref|NP_175645.1| coatomer complex subunit, putative; protein id: At1g52360.1
[Arabidopsis thaliana] gi|25312791|pir||G96563 probable
coatomer complex subunit, 33791-27676 [imported] -
Arabidopsis thaliana
gi|12323125|gb|AAG51545.1|AC037424_10 coatomer complex
subunit, putative; 33791-27676 [Arabidopsis thaliana]
Length = 926
Score = 158 bits (400), Expect = 7e-38
Identities = 82/138 (59%), Positives = 104/138 (74%), Gaps = 10/138 (7%)
Frame = -1
Query: 745 DPEEYPNLFEDXQVALAVESKSVETRGVYPPAEEYVNHAGKSHVTLVEAFRNMQIEGEQP 566
DPEEY NLFED QVAL+VE+K+VETRGVY A++Y +HA KS +TLVEAFRN+Q+E E+
Sbjct: 791 DPEEYSNLFEDWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTLVEAFRNLQVEEEES 850
Query: 565 LENGESSHE--LAEHNGEE--------DHTEEHEEQNGEEGSQEEGVVVDADSTDGAVLI 416
LENG+ HE +AE NG E +H EEH E+ +E +EEG +VD DSTDGAVL+
Sbjct: 851 LENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHHEE--KEAEEEEG-IVDGDSTDGAVLV 907
Query: 415 NGNEADEDWSANNKEDPS 362
NG+EADE+W NN+ +PS
Sbjct: 908 NGSEADEEWGTNNEGNPS 925
>dbj|BAC42999.1| putative coatomer complex subunit [Arabidopsis thaliana]
Length = 485
Score = 158 bits (400), Expect = 7e-38
Identities = 82/138 (59%), Positives = 104/138 (74%), Gaps = 10/138 (7%)
Frame = -1
Query: 745 DPEEYPNLFEDXQVALAVESKSVETRGVYPPAEEYVNHAGKSHVTLVEAFRNMQIEGEQP 566
DPEEY NLFED QVAL+VE+K+VETRGVY A++Y +HA KS +TLVEAFRN+Q+E E+
Sbjct: 350 DPEEYSNLFEDWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTLVEAFRNLQVEEEES 409
Query: 565 LENGESSHE--LAEHNGEE--------DHTEEHEEQNGEEGSQEEGVVVDADSTDGAVLI 416
LENG+ HE +AE NG E +H EEH E+ +E +EEG +VD DSTDGAVL+
Sbjct: 410 LENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHHEE--KEAEEEEG-IVDGDSTDGAVLV 466
Query: 415 NGNEADEDWSANNKEDPS 362
NG+EADE+W NN+ +PS
Sbjct: 467 NGSEADEEWGTNNEGNPS 484
>gb|AAM53344.1| putative coatomer complex subunit [Arabidopsis thaliana]
gi|24899747|gb|AAN65088.1| putative coatomer complex
subunit [Arabidopsis thaliana]
Length = 909
Score = 144 bits (364), Expect = 1e-33
Identities = 72/114 (63%), Positives = 88/114 (77%)
Frame = -1
Query: 745 DPEEYPNLFEDXQVALAVESKSVETRGVYPPAEEYVNHAGKSHVTLVEAFRNMQIEGEQP 566
DPEEY NLFED QVAL+VE+ + ETRGVY AE Y +HA K +TLVEAFRN+Q+E E+
Sbjct: 791 DPEEYSNLFEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEES 850
Query: 565 LENGESSHELAEHNGEEDHTEEHEEQNGEEGSQEEGVVVDADSTDGAVLINGNE 404
LENG HE+AE NG ++ + EEQ EE ++EEG VVDADSTDGAVL+NG+E
Sbjct: 851 LENGNIDHEVAEENGHVENEGDEEEQQEEEVNEEEG-VVDADSTDGAVLVNGSE 903
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,780,400
Number of Sequences: 1393205
Number of extensions: 13554471
Number of successful extensions: 77574
Number of sequences better than 10.0: 561
Number of HSP's better than 10.0 without gapping: 53754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67674
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
