Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000131A_C01 KMC000131A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC44382.1| 18 kDa outer membrane protein 39 0.068
ref|NP_702892.1| Plasmodium falciparum trophozoite antigen r45-l... 39 0.068
ref|NP_739607.1| NADH dehydrogenase subunit 5 [Thrips imaginis] ... 36 0.44
ref|NP_012593.1| Putative serine/threonine protein kinase that e... 36 0.58
dbj|BAA74543.1| putrescine N-methyltransferase [Nicotiana sylves... 35 0.99
>gb|AAC44382.1| 18 kDa outer membrane protein
Length = 157
Score = 38.9 bits (89), Expect = 0.068
Identities = 29/98 (29%), Positives = 49/98 (49%), Gaps = 2/98 (2%)
Frame = -2
Query: 547 SSAGQIDLNSHPNREDMQMDITGLGMSSHHLETRSNPVRENIDQNGLRSFSSELQNGHHS 368
SS+G+ D N++ N + M ++ G GM++ L+TR N V N D + +L + H +
Sbjct: 22 SSSGKTDANANMNGDAMAVNQFG-GMTTEDLQTRYNTVYFNFDSYAVEGEYRQLLDAHAA 80
Query: 367 SLLTHSNGEGQRHFSDERCFP--SRVWNQERRDEVYNH 260
L + ++ +DER P + Q R D V N+
Sbjct: 81 YLTSSNSKVTVTGHADERGTPEYNIALGQRRADAVKNY 118
>ref|NP_702892.1| Plasmodium falciparum trophozoite antigen r45-like protein
[Plasmodium falciparum 3D7] gi|23498309|emb|CAD49281.1|
Plasmodium falciparum trophozoite antigen r45-like
protein [Plasmodium falciparum 3D7]
Length = 1222
Score = 38.9 bits (89), Expect = 0.068
Identities = 30/142 (21%), Positives = 57/142 (40%)
Frame = -2
Query: 667 QKDHSHQIDESDTNGAPQRDDTSHLEKEEGLNKGQSEVGESSAGQIDLNSHPNREDMQMD 488
+ D +H+ D + +G+ + D +H + G N +S + ++H + + + D
Sbjct: 411 KSDSNHKSDSNHKSGSNHKSDCNH---KSGSNHKSDSNHQSDCNHMSDHNHKSDNNHKSD 467
Query: 487 ITGLGMSSHHLETRSNPVRENIDQNGLRSFSSELQNGHHSSLLTHSNGEGQRHFSDERCF 308
+ SSH ++ + N +S SS +H S H++ H SD
Sbjct: 468 SSHKSDSSHKSDSSHKSGSNHKSDNNHKSDSSHKSGSNHKS--DHNHKSDSNHKSD---- 521
Query: 307 PSRVWNQERRDEVYNHPNQSQN 242
S N+ NH N+S +
Sbjct: 522 -SNHKNESNHKNESNHKNESNH 542
Score = 34.7 bits (78), Expect = 1.3
Identities = 29/149 (19%), Positives = 63/149 (41%), Gaps = 3/149 (2%)
Frame = -2
Query: 676 SAAQKDHSHQIDESDTNGAPQRDDTSHLEK---EEGLNKGQSEVGESSAGQIDLNSHPNR 506
S+ + D SH+ D S +G+ + D +H + G N +S + ++H N
Sbjct: 468 SSHKSDSSHKSDSSHKSGSNHKSDNNHKSDSSHKSGSNHKSDHNHKSDSNHKSDSNHKNE 527
Query: 505 EDMQMDITGLGMSSHHLETRSNPVRENIDQNGLRSFSSELQNGHHSSLLTHSNGEGQRHF 326
+ + + S+H E+ + + + +S S+ + + +H S H + H
Sbjct: 528 SNHKNESNHKNESNHKNESNHKNESNHKNDSNHKSDSNHMSDHNHKSDNNHKS--DHNHM 585
Query: 325 SDERCFPSRVWNQERRDEVYNHPNQSQNS 239
SD S ++ + + +H ++S N+
Sbjct: 586 SDHN-HKSDNNHKSDNNHMSDHNHKSDNN 613
>ref|NP_739607.1| NADH dehydrogenase subunit 5 [Thrips imaginis]
gi|24762258|gb|AAN64178.1| NADH dehydrogenase subunit 5
[Thrips imaginis]
Length = 564
Score = 36.2 bits (82), Expect = 0.44
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = -3
Query: 240 VFLNIFF*TWIFLFLLNW------THTVYILLSFSKGWLKIVLSKYKNVILLFIFEVCIF 79
+ LNIFF + F F +++ + +Y+ SF W + S Y + L F F C+F
Sbjct: 1 MLLNIFFFMFPFFFFISFYFFFLSLYMIYLNFSFFVCWNMHISSFYISFPLYFDFISCMF 60
Query: 78 MEMLLIIS 55
+ M+L+IS
Sbjct: 61 LAMVLLIS 68
>ref|NP_012593.1| Putative serine/threonine protein kinase that enhances spermine
uptake; Ptk2p [Saccharomyces cerevisiae]
gi|1346383|sp|P47116|PTK2_YEAST Serine/threonine-protein
kinase PTK2/STK2 gi|1078291|pir||S57078 probable protein
kinase PTK2 (EC 2.7.1.-) - yeast (Saccharomyces
cerevisiae) gi|1015729|emb|CAA89587.1| ORF YJR059w
[Saccharomyces cerevisiae] gi|1019681|gb|AAB39285.1| ORF
YJR059w gi|1772440|dbj|BAA13325.1| PTK2p [Saccharomyces
cerevisiae]
Length = 818
Score = 35.8 bits (81), Expect = 0.58
Identities = 32/112 (28%), Positives = 45/112 (39%), Gaps = 5/112 (4%)
Frame = -2
Query: 637 SDTNGAPQRDDTSHLEKEE---GLNKGQSEVGESSAGQIDLNSHPNREDMQM--DITGLG 473
S + GA QR + H K G + G +SS DL H N + DI G G
Sbjct: 71 SSSAGARQRSASLHRRKNNASVGFSNGSVSSHKSSVALQDLIKHNNNPYLNSPSDILGTG 130
Query: 472 MSSHHLETRSNPVRENIDQNGLRSFSSELQNGHHSSLLTHSNGEGQRHFSDE 317
R V + ++ R+ + E +N HH+ L SN HF +E
Sbjct: 131 TGIASTRDRDRAVLDR-EKEKERARNKE-RNTHHAGLPQRSNSMASHHFPNE 180
>dbj|BAA74543.1| putrescine N-methyltransferase [Nicotiana sylvestris]
Length = 319
Score = 35.0 bits (79), Expect = 0.99
Identities = 21/65 (32%), Positives = 32/65 (48%)
Frame = -2
Query: 538 GQIDLNSHPNREDMQMDITGLGMSSHHLETRSNPVRENIDQNGLRSFSSELQNGHHSSLL 359
G I +N + N + G S H N + E+ QNG ++ +SE QNGH + +
Sbjct: 17 GAIPMNGYQNGTSKHQNGHQNGTSEHR-NGHQNGISEH--QNGHQNGTSEHQNGHQNGTI 73
Query: 358 THSNG 344
+H NG
Sbjct: 74 SHDNG 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,594,862
Number of Sequences: 1393205
Number of extensions: 12057916
Number of successful extensions: 37896
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 34959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37468
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
