Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000128A_C01 KMC000128A_c01
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB91867.1| putative formin binding protein [Oryza sativa (j... 78 1e-13
ref|NP_175113.1| hypothetical protein; protein id: At1g44910.1 [... 62 1e-08
gb|AAF78276.1|AC020576_20 Contains similarity to formin binding ... 62 1e-08
gb|AAF69150.1|AC007915_2 F27F5.2 [Arabidopsis thaliana] 62 1e-08
dbj|BAB17164.1| P0698A04.25 [Oryza sativa (japonica cultivar-gro... 45 8e-04
>dbj|BAB91867.1| putative formin binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 1058
Score = 77.8 bits (190), Expect = 1e-13
Identities = 43/101 (42%), Positives = 59/101 (57%), Gaps = 2/101 (1%)
Frame = -1
Query: 709 DSDSLDATETQPSNENQRSGGDNRKXRKQHXSPEDTSHEVD-KERTKKSHGHSSDRKKSR 533
D D++DA ++ + + + R H + +D S E D K+ +KKS HSSDRKKSR
Sbjct: 954 DIDAVDADSHGSKDKKREKDKEKKHKRHHHDTADDVSSERDEKDDSKKSRRHSSDRKKSR 1013
Query: 532 RHASGHESD-EGRHKRRRRDHRSDSHREGDYGDLEDGEFGD 413
+H +SD E RHKR ++D R S R G DLEDGE G+
Sbjct: 1014 KHTHASDSDSENRHKRHKKD-RDSSRRNGTRDDLEDGELGE 1053
>ref|NP_175113.1| hypothetical protein; protein id: At1g44910.1 [Arabidopsis thaliana]
Length = 946
Score = 61.6 bits (148), Expect = 1e-08
Identities = 40/106 (37%), Positives = 61/106 (56%), Gaps = 7/106 (6%)
Frame = -1
Query: 709 DSDSLDATETQPSNENQRSGGDNR--KXRKQHX--SPEDTSHEVDK--ERTKKSHGHSSD 548
+SD A + +++++ G +R K R++H S ED S + D E K S H +D
Sbjct: 845 ESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNNSDEDVSSDRDDRDESKKSSRKHGND 904
Query: 547 RKKSRRHASGHESD-EGRHKRRRRDHRSDSHREGDYGDLEDGEFGD 413
RKKSR+HA+ ES+ E RHKR+++ +S R +LEDGE G+
Sbjct: 905 RKKSRKHANSPESESENRHKRQKK----ESSRRSGNDELEDGEVGE 946
Score = 34.7 bits (78), Expect = 1.3
Identities = 19/84 (22%), Positives = 38/84 (44%), Gaps = 1/84 (1%)
Frame = -1
Query: 694 DATETQPSNENQRSGGDNRKXRKQHXSPEDTSHEVDK-ERTKKSHGHSSDRKKSRRHASG 518
D + + E +R ++ K+ S +T+ +V + + +K G DRK RRH +
Sbjct: 820 DKDKERREKEREREKEKGKERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNN 879
Query: 517 HESDEGRHKRRRRDHRSDSHREGD 446
+ D + R + + S + G+
Sbjct: 880 SDEDVSSDRDDRDESKKSSRKHGN 903
>gb|AAF78276.1|AC020576_20 Contains similarity to formin binding protein 11 from Mus musculus
gb|AF135439 and contains multiple FF PF|01846 and WW
PF|00397 domains. EST gb|AI997587 comes from this gene.
[Arabidopsis thaliana]
Length = 919
Score = 61.6 bits (148), Expect = 1e-08
Identities = 40/106 (37%), Positives = 61/106 (56%), Gaps = 7/106 (6%)
Frame = -1
Query: 709 DSDSLDATETQPSNENQRSGGDNR--KXRKQHX--SPEDTSHEVDK--ERTKKSHGHSSD 548
+SD A + +++++ G +R K R++H S ED S + D E K S H +D
Sbjct: 818 ESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNNSDEDVSSDRDDRDESKKSSRKHGND 877
Query: 547 RKKSRRHASGHESD-EGRHKRRRRDHRSDSHREGDYGDLEDGEFGD 413
RKKSR+HA+ ES+ E RHKR+++ +S R +LEDGE G+
Sbjct: 878 RKKSRKHANSPESESENRHKRQKK----ESSRRSGNDELEDGEVGE 919
Score = 34.7 bits (78), Expect = 1.3
Identities = 19/84 (22%), Positives = 38/84 (44%), Gaps = 1/84 (1%)
Frame = -1
Query: 694 DATETQPSNENQRSGGDNRKXRKQHXSPEDTSHEVDK-ERTKKSHGHSSDRKKSRRHASG 518
D + + E +R ++ K+ S +T+ +V + + +K G DRK RRH +
Sbjct: 793 DKDKERREKEREREKEKGKERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNN 852
Query: 517 HESDEGRHKRRRRDHRSDSHREGD 446
+ D + R + + S + G+
Sbjct: 853 SDEDVSSDRDDRDESKKSSRKHGN 876
>gb|AAF69150.1|AC007915_2 F27F5.2 [Arabidopsis thaliana]
Length = 937
Score = 61.6 bits (148), Expect = 1e-08
Identities = 40/106 (37%), Positives = 61/106 (56%), Gaps = 7/106 (6%)
Frame = -1
Query: 709 DSDSLDATETQPSNENQRSGGDNR--KXRKQHX--SPEDTSHEVDK--ERTKKSHGHSSD 548
+SD A + +++++ G +R K R++H S ED S + D E K S H +D
Sbjct: 836 ESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNNSDEDVSSDRDDRDESKKSSRKHGND 895
Query: 547 RKKSRRHASGHESD-EGRHKRRRRDHRSDSHREGDYGDLEDGEFGD 413
RKKSR+HA+ ES+ E RHKR+++ +S R +LEDGE G+
Sbjct: 896 RKKSRKHANSPESESENRHKRQKK----ESSRRSGNDELEDGEVGE 937
Score = 34.7 bits (78), Expect = 1.3
Identities = 19/84 (22%), Positives = 38/84 (44%), Gaps = 1/84 (1%)
Frame = -1
Query: 694 DATETQPSNENQRSGGDNRKXRKQHXSPEDTSHEVDK-ERTKKSHGHSSDRKKSRRHASG 518
D + + E +R ++ K+ S +T+ +V + + +K G DRK RRH +
Sbjct: 811 DKDKERREKEREREKEKGKERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNN 870
Query: 517 HESDEGRHKRRRRDHRSDSHREGD 446
+ D + R + + S + G+
Sbjct: 871 SDEDVSSDRDDRDESKKSSRKHGN 894
>dbj|BAB17164.1| P0698A04.25 [Oryza sativa (japonica cultivar-group)]
gi|12697612|dbj|BAB07941.2| P0684C01.2 [Oryza sativa
(japonica cultivar-group)]
Length = 285
Score = 45.4 bits (106), Expect = 8e-04
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = -1
Query: 643 NRKXRKQHXSPEDTSHEVDKERTKKSHGHSSDRKKSRRHASGHESDEGRHKRRRRDHRSD 464
+RK R++ S D+ + D + +K H DRK+ R+H + RHKRR + SD
Sbjct: 50 SRKHRRRGHSSSDSESDSDSDGDRK-HRKRKDRKRHRKHGHSDSDEAKRHKRRSKRRSSD 108
Query: 463 SHREGDYGDLEDG 425
S + D + + G
Sbjct: 109 SSDDTDSDEYDSG 121
Score = 43.5 bits (101), Expect = 0.003
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Frame = -1
Query: 712 TDSDSLDATETQPSNENQRSGGDNRKXRKQHXSPEDTS----HEVDKERTKKSHGHSSDR 545
TDSD D+ + EN+R +R+ ++H S D+ D+ER HSS R
Sbjct: 113 TDSDEYDSGSEE---ENRRKKRSHRRKHRRHSSRSDSDASDYSSDDEERRSSKKDHSSSR 169
Query: 544 KKSRRH------ASGHESDEGRHKRRRRDHRS 467
H SG ES+E R ++ HRS
Sbjct: 170 SHRHHHHRSSGDDSGSESEERGRSRHKKHHRS 201
Score = 37.4 bits (85), Expect = 0.21
Identities = 21/96 (21%), Positives = 42/96 (42%)
Frame = -1
Query: 706 SDSLDATETQPSNENQRSGGDNRKXRKQHXSPEDTSHEVDKERTKKSHGHSSDRKKSRRH 527
S S +++ + + +RK ++H + + K R+K+ SSD S +
Sbjct: 59 SSSDSESDSDSDGDRKHRKRKDRKRHRKHGHSDSDEAKRHKRRSKRRSSDSSDDTDSDEY 118
Query: 526 ASGHESDEGRHKRRRRDHRSDSHREGDYGDLEDGEF 419
SG E + ++R++R HR R D + ++
Sbjct: 119 DSGSEEE---NRRKKRSHRRKHRRHSSRSDSDASDY 151
Score = 36.2 bits (82), Expect = 0.46
Identities = 31/104 (29%), Positives = 44/104 (41%), Gaps = 9/104 (8%)
Frame = -1
Query: 706 SDSLDATETQPSNENQRSGGDNRKXRKQHXSPEDTSHEVDKERTKKSHGHSSDRKKSR-- 533
SDS DA++ +E +RS +K H S H + S S +R +SR
Sbjct: 144 SDS-DASDYSSDDEERRSS------KKDHSSSRSHRHHHHRSSGDDSGSESEERGRSRHK 196
Query: 532 -RHASGHE---SDEGRHKRRRR---DHRSDSHREGDYGDLEDGE 422
H S E SD HK RR + SD G+Y + +G+
Sbjct: 197 KHHRSSDEDATSDSNNHKHRRSRSLEESSDDAAAGEYEKVRNGK 240
Score = 35.4 bits (80), Expect = 0.79
Identities = 21/71 (29%), Positives = 28/71 (38%)
Frame = -1
Query: 673 SNENQRSGGDNRKXRKQHXSPEDTSHEVDKERTKKSHGHSSDRKKSRRHASGHESDEGRH 494
S+E+ S +N K R+ E + E K +G R H +GH RH
Sbjct: 202 SDEDATSDSNNHKHRRSRSLEESSDDAAAGEYEKVRNG-------KRPHKTGHHRHHHRH 254
Query: 493 KRRRRDHRSDS 461
DHRS S
Sbjct: 255 HHHHHDHRSSS 265
Score = 34.3 bits (77), Expect = 1.8
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Frame = -1
Query: 673 SNENQRSGGDNRKXRKQHXSPEDTSH-------EVDKERTKKSHGHSSDRKKSRRH---- 527
S+ ++ R R+ S +DT E + R K+SH R+K RRH
Sbjct: 90 SDSDEAKRHKRRSKRRSSDSSDDTDSDEYDSGSEEENRRKKRSH-----RRKHRRHSSRS 144
Query: 526 ---ASGHESDEGRHKRRRRDHRSD-SHREGDYGDLEDGEFGDVADR 401
AS + SD+ + ++DH S SHR + D + +R
Sbjct: 145 DSDASDYSSDDEERRSSKKDHSSSRSHRHHHHRSSGDDSGSESEER 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,135,509
Number of Sequences: 1393205
Number of extensions: 11496745
Number of successful extensions: 43360
Number of sequences better than 10.0: 918
Number of HSP's better than 10.0 without gapping: 35357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41245
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
