Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000102A_C16 KMC000102A_c16
(905 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF73016.1|AF262934_1 ubiquitin conjugating protein [Avicenni... 319 3e-86
dbj|BAB40310.1| ubiquitin-conjugating enzyme (E2) [Nicotiana tab... 314 1e-84
ref|NP_565289.1| E2, ubiquitin-conjugating enzyme 2 (UBC2); prot... 314 1e-84
sp|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2-17 kDa (Ubi... 314 1e-84
dbj|BAB85469.1| Rad6 [Oryza sativa (japonica cultivar-group)] gi... 313 2e-84
>gb|AAF73016.1|AF262934_1 ubiquitin conjugating protein [Avicennia marina]
Length = 152
Score = 319 bits (818), Expect = 3e-86
Identities = 151/152 (99%), Positives = 152/152 (99%)
Frame = -3
Query: 903 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 724
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
Query: 723 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 544
EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYD+AAILTSIQSLLCDPNPNS
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNS 120
Query: 543 PANSEAARMFSENKREYNRRVREIVEQSWTAD 448
PANSEAARMFSENKREYNRRVREIVEQSWTAD
Sbjct: 121 PANSEAARMFSENKREYNRRVREIVEQSWTAD 152
>dbj|BAB40310.1| ubiquitin-conjugating enzyme (E2) [Nicotiana tabacum]
Length = 152
Score = 314 bits (805), Expect = 1e-84
Identities = 148/152 (97%), Positives = 151/152 (98%)
Frame = -3
Query: 903 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 724
MSTPARKRLMRDFKRLQQDPPAGISGAP DNNIMLWNAVIFGPDDTPWDGGTFKLTLQF+
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPYDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFS 60
Query: 723 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 544
EDYPNKPPTVRF+SRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61 EDYPNKPPTVRFISRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 543 PANSEAARMFSENKREYNRRVREIVEQSWTAD 448
PANSEAARMFSENKREYNR+VREIVEQSWTAD
Sbjct: 121 PANSEAARMFSENKREYNRKVREIVEQSWTAD 152
>ref|NP_565289.1| E2, ubiquitin-conjugating enzyme 2 (UBC2); protein id: At2g02760.1,
supported by cDNA: gi_13899126, supported by cDNA:
gi_18377455 [Arabidopsis thaliana]
gi|1174844|sp|P42745|UBC2_ARATH Ubiquitin-conjugating
enzyme E2-17 kDa 2 (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein 2) gi|1076426|pir||S43783
ubiquitin-conjugating enzyme UBC2 - Arabidopsis thaliana
gi|431264|gb|AAA32899.1| ubiquitin conjugating enzyme
gi|2689243|emb|CAA73476.1| ubiquitin conjugating enzyme
[Arabidopsis thaliana] gi|2947065|gb|AAC05346.1| E2,
ubiquitin-conjugating enzyme 2 (UBC2) [Arabidopsis
thaliana] gi|13899127|gb|AAK48985.1|AF370558_1 putative
ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
gi|18377456|gb|AAL66894.1| putative
ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Length = 152
Score = 314 bits (805), Expect = 1e-84
Identities = 148/152 (97%), Positives = 152/152 (99%)
Frame = -3
Query: 903 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 724
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 723 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 544
EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 543 PANSEAARMFSENKREYNRRVREIVEQSWTAD 448
PANSEAARMFSE+KREYNRRVRE+VEQSWTAD
Sbjct: 121 PANSEAARMFSESKREYNRRVREVVEQSWTAD 152
>sp|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) gi|166422|gb|AAA18528.1|
ubiquitin carrier protein
Length = 152
Score = 314 bits (805), Expect = 1e-84
Identities = 148/152 (97%), Positives = 151/152 (98%)
Frame = -3
Query: 903 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 724
MSTPARKRLMRDFKRLQ DPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKL+LQF+
Sbjct: 1 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 723 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 544
EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 543 PANSEAARMFSENKREYNRRVREIVEQSWTAD 448
PANSEAARMFSENKREYNRRVRE+VEQSWTAD
Sbjct: 121 PANSEAARMFSENKREYNRRVREVVEQSWTAD 152
>dbj|BAB85469.1| Rad6 [Oryza sativa (japonica cultivar-group)]
gi|28269456|gb|AAO37999.1| ubiquitin carrier protein
[Oryza sativa (japonica cultivar-group)]
Length = 152
Score = 313 bits (803), Expect = 2e-84
Identities = 148/152 (97%), Positives = 150/152 (98%)
Frame = -3
Query: 903 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 724
MSTPARKRLMRDFKRLQQDPPAGISGAP DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 60
Query: 723 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 544
EDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS
Sbjct: 61 EDYPNKPPVVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 120
Query: 543 PANSEAARMFSENKREYNRRVREIVEQSWTAD 448
PANSEAAR+FSENKREYNR+VREIVEQSWTAD
Sbjct: 121 PANSEAARLFSENKREYNRKVREIVEQSWTAD 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 780,552,682
Number of Sequences: 1393205
Number of extensions: 17066513
Number of successful extensions: 39605
Number of sequences better than 10.0: 700
Number of HSP's better than 10.0 without gapping: 37495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39235
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49363855696
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
