KMC000101A_c04
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC000101A_C04 KMC000101A_c04
ggataaagacaacaaaagtcattaacaaacagcaaagtgaacaaagaagaaagcactact
tgaaatgaatGATGGGGACAACACCCTTTCAAAGCTTTTTCCAATTACATTCACATCATG
CTACAACAAAAGACAATGACTCTTTTTTTTCTTCATTTTATCCAAAGCTTAATAACAAAA
TCAAAATAATTGACATTATTTATAAGACTCAAAACAACAGACTCCAAATAAAAATAAAAA
GGAAAAAGCCGGTTCCTCCATTTCTTTTATCTACTCTTCGTCAGCCTCATGTTTTCACTC
TTCAACAGCAAGGGGCACAGACTCAGCCAATTTGCGGTACTTAAGTGCATAGAACATCTC
AAGATAGCGGCGGCTCTCAAGGCGGTCAAGGTTAGACACATGCTTCCAGAAGCCATAGAC
ACCAGTGAGAGTGAGAAGCCTCTGAGAGTAAATCTGCCATGTGTACTTTTCTTCAATACG
CTGAAGACCACCATGAGAGATATTGTCCCAGTGAGTTGGATCAACCTTAACCTTCTCAAA
GAACTCAACAAGTAAATCGGCAGCACGGTCACCATGGTAAGGGTCAATGTGGAAACCAGA
TTTTCCATGCACAATGATCTCAGCAGG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000101A_C04 KMC000101A_c04
         (627 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAC28107.1| nodule-enhanced sucrose synthase [Pisum sativum]       223  2e-57
emb|CAA09910.1| sucrose synthase [Pisum sativum]                      223  2e-57
sp|P31926|SUSY_VICFA Sucrose synthase (Sucrose-UDP glucosyltrans...   222  4e-57
emb|CAB40795.1| sucrose synthase [Medicago truncatula]                220  1e-56
emb|CAB40794.1| sucrose synthase [Medicago truncatula]                220  1e-56

>gb|AAC28107.1| nodule-enhanced sucrose synthase [Pisum sativum]
          Length = 806

 Score =  223 bits (568), Expect = 2e-57
 Identities = 106/110 (96%), Positives = 107/110 (96%)
 Frame = -1

Query: 627  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPTHWDNISHGGLQRIEEKYTWQIY 448
            PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVK DP+HWD IS GGLQRIEEKYTWQIY
Sbjct: 697  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKTDPSHWDKISQGGLQRIEEKYTWQIY 756

Query: 447  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 298
            SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE
Sbjct: 757  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 806

>emb|CAA09910.1| sucrose synthase [Pisum sativum]
          Length = 806

 Score =  223 bits (568), Expect = 2e-57
 Identities = 106/110 (96%), Positives = 107/110 (96%)
 Frame = -1

Query: 627  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPTHWDNISHGGLQRIEEKYTWQIY 448
            PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVK DP+HWD IS GGLQRIEEKYTWQIY
Sbjct: 697  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKTDPSHWDKISQGGLQRIEEKYTWQIY 756

Query: 447  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 298
            SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE
Sbjct: 757  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 806

>sp|P31926|SUSY_VICFA Sucrose synthase (Sucrose-UDP glucosyltransferase)
            gi|322721|pir||S31479 sucrose synthase (EC 2.4.1.13) -
            fava bean gi|22038|emb|CAA49428.1| sucrose synthase
            [Vicia faba] gi|295426|gb|AAC37346.1|
            UDP-glucose:D-fructose-2-glucosyltransferase
          Length = 806

 Score =  222 bits (565), Expect = 4e-57
 Identities = 106/110 (96%), Positives = 107/110 (96%)
 Frame = -1

Query: 627  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPTHWDNISHGGLQRIEEKYTWQIY 448
            PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVK DP+HWD IS GGLQRIEEKYTWQIY
Sbjct: 697  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISLGGLQRIEEKYTWQIY 756

Query: 447  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 298
            SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE
Sbjct: 757  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 806

>emb|CAB40795.1| sucrose synthase [Medicago truncatula]
          Length = 805

 Score =  220 bits (561), Expect = 1e-56
 Identities = 105/109 (96%), Positives = 106/109 (96%)
 Frame = -1

Query: 627  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPTHWDNISHGGLQRIEEKYTWQIY 448
            PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDP+HWD IS GGLQRIEEKYTW IY
Sbjct: 697  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPSHWDKISQGGLQRIEEKYTWTIY 756

Query: 447  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 301
            SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE
Sbjct: 757  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 805

>emb|CAB40794.1| sucrose synthase [Medicago truncatula]
          Length = 805

 Score =  220 bits (561), Expect = 1e-56
 Identities = 105/109 (96%), Positives = 106/109 (96%)
 Frame = -1

Query: 627  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPTHWDNISHGGLQRIEEKYTWQIY 448
            PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDP+HWD IS GGLQRIEEKYTW IY
Sbjct: 697  PAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPSHWDKISQGGLQRIEEKYTWTIY 756

Query: 447  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 301
            SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE
Sbjct: 757  SQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 805

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,883,919
Number of Sequences: 1393205
Number of extensions: 10252854
Number of successful extensions: 34932
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 33751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34881
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GENLf081d04 BP066749 1 530
2 GNf016e11 BP068540 9 483
3 MWM072e06_f AV765860 22 387
4 MPDL056a12_f AV779323 27 598
5 MPDL073e07_f AV780256 30 622
6 GENLf074a06 BP066325 30 613
7 GNLf015g11 BP075708 31 524
8 GNf016c03 BP068514 32 473
9 GENLf034f01 BP064137 32 610
10 GNf025g03 BP069195 34 622
11 GNf012c03 BP068227 35 610
12 MPD003f02_f AV770205 38 253
13 GENLf059c11 BP065498 38 611
14 GENLf019h12 BP063397 38 604
15 GENf050d03 BP060465 38 415
16 GENLf022h04 BP063534 38 471
17 GNf046f01 BP070771 39 435
18 MPDL019e09_f AV777468 39 466
19 GENLf036d04 BP064232 39 611
20 MRL001h07_f BP083761 39 499
21 MRL023g02_f BP084917 39 325
22 MR012h03_f BP076904 39 576
23 MWM120b01_f AV766649 39 633
24 GENLf016h07 BP063240 39 606
25 GENf021f04 BP059262 39 436
26 GENLf084a06 BP066907 39 608
27 GENLf010h03 BP062897 39 637
28 GENLf005d04 BP062610 39 610
29 SPDL022d03_f BP053368 39 598
30 GENLf005d12 BP062614 39 637
31 GENLf061g11 BP065635 39 593
32 SPDL034h01_f BP054154 39 529
33 MF022h02_f BP029450 39 457
34 GENLf011e08 BP062936 39 645
35 GENLf036b08 BP064217 39 613
36 GENLf004f08 BP062583 39 637
37 GENLf028b11 BP063817 39 602
38 GENLf010a01 BP062853 39 619
39 GENLf092e10 BP067386 39 614
40 GENLf028c09 BP063825 39 610
41 GENLf014h11 BP063118 39 637
42 GENLf004c08 BP062561 39 566
43 GENLf061e10 BP065619 39 544
44 GENLf045f06 BP064731 39 472
45 GENLf082c03 BP066798 39 609
46 GENLf075b04 BP066393 39 593
47 GENf057b06 BP060769 39 595
48 GENLf062a12 BP065652 39 618
49 GENLf033h03 BP064099 39 619
50 GENLf049f11 BP064976 39 648
51 GENLf080g04 BP066712 39 650
52 GENLf062a09 BP065650 39 547
53 MRL037a12_f BP085522 39 418
54 GENLf019e11 BP063379 39 610
55 GENLf009g01 BP062837 40 619
56 MPDL078f05_f AV780539 40 636
57 GENLf015c01 BP063135 40 454
58 MR057a01_f BP080344 40 461
59 GENLf072f07 BP066257 40 613
60 GENLf090d05 BP067262 40 411
61 GENLf070e10 BP066129 41 610
62 MPDL075h06_f AV780389 41 664
63 MPDL086e09_f AV780996 41 508
64 GENLf092d12 BP067379 41 610
65 MR076d11_f BP081849 41 403
66 MF086a07_f BP032804 41 580
67 GENLf073g03 BP066312 41 591
68 GENLf053f08 BP065191 42 551
69 MRL030f02_f BP085220 42 610
70 GENLf033f10 BP064089 42 619
71 GENLf078f09 BP066606 42 582
72 GENLf090g04 BP067285 42 594
73 MRL047d01_f BP085974 43 452
74 GENf001e09 BP058360 43 457
75 MPDL047f01_f AV778888 43 534
76 GENLf023c03 BP063549 43 613
77 GENLf007f07 BP062725 43 642
78 GNLf015e01 BP075684 44 366
79 GENLf079e07 BP066647 44 618
80 GENLf062d01 BP065667 44 552
81 GENLf015a03 BP063121 45 613
82 MRL019b05_f BP084673 45 449
83 GENLf015b09 BP063132 45 553
84 GENLf049a09 BP064939 45 619
85 MPDL088c06_f AV781095 45 536
86 GENLf028a11 BP063808 45 607
87 GNf099e12 BP074716 46 469
88 GENLf009h11 BP062851 46 609
89 GNf027g01 BP069334 46 494
90 GENLf085c01 BP066966 47 472
91 GENLf015h07 BP063173 47 530
92 GENLf090c03 BP067255 47 613
93 GENLf022f07 BP063519 47 597
94 GENLf048f05 BP064915 47 608
95 MPDL015c07_f AV777261 48 335
96 GENLf044e04 BP064671 48 613
97 GENLf089b06 BP067192 48 616
98 MPDL023f09_f AV777674 50 573
99 GENLf070h01 BP066144 50 596
100 GENLf026h01 BP063734 51 619
101 SPDL017a03_f BP053031 53 545
102 MPDL071d11_f AV780134 60 561
103 GENLf024e09 BP063607 63 586
104 GENLf017c11 BP063263 64 612
105 MPDL040b11_f AV778517 64 610
106 MRL007c12_f BP084053 65 266
107 GNf046e04 BP070764 65 518
108 MRL025c04_f BP084991 71 619
109 GNf100b06 BP074756 80 341
110 GENLf028d02 BP063830 80 608
111 MFB008h02_f BP034512 84 567
112 SPDL078g09_f BP056869 86 316
113 GENLf075b08 BP066396 86 593
114 MRL020a04_f BP084722 87 484
115 GENLf055b12 BP065269 87 612
116 GENLf028c02 BP063819 88 597
117 GENLf021h03 BP063477 105 610
118 MPDL070a04_f AV780058 106 678
119 GENLf025h09 BP063679 143 660
120 GENLf077b06 BP066516 144 661
121 GENLf015c03 BP063137 150 666




Lotus japonicus
Kazusa DNA Research Institute