Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000098A_C02 KMC000098A_c02
(901 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM19210.1|AF378125_1 GAI-like protein 1 [Vitis vinifera] 216 3e-55
ref|NP_172945.1| signal response protein (GAI); protein id: At1g... 207 1e-52
emb|CAA72178.1| RGA2 protein [Arabidopsis thaliana] 207 1e-52
emb|CAA75492.1| GAI [Arabidopsis thaliana] 207 1e-52
gb|AAO62757.1| GIA/RGA-like gibberellin response modulator [Goss... 204 1e-51
>gb|AAM19210.1|AF378125_1 GAI-like protein 1 [Vitis vinifera]
Length = 590
Score = 216 bits (551), Expect = 3e-55
Identities = 104/127 (81%), Positives = 112/127 (87%), Gaps = 2/127 (1%)
Frame = -3
Query: 896 FLDRFTESLHYYSALFDSLEGS--SAVESQDKAMTEIYLGKQICNVVACEGSDRIERHET 723
FLDRFTESLHYYS LFDSLEG S V +QDK M+E+YLG+QICNVVACEG +R+ERHET
Sbjct: 452 FLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMSEVYLGQQICNVVACEGPERVERHET 511
Query: 722 LTQWRTRFNSAGLSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIAT 543
L QWR R SAG PV+LGSNAFKQASMLLALFAGGDGYRVEENNGCL LGWHTRPLIAT
Sbjct: 512 LAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIAT 571
Query: 542 SAWQLAS 522
SAWQLA+
Sbjct: 572 SAWQLAN 578
>ref|NP_172945.1| signal response protein (GAI); protein id: At1g14920.1, supported
by cDNA: gi_16648833 [Arabidopsis thaliana]
gi|25366590|pir||H86282 protein F10B6.34 [imported] -
Arabidopsis thaliana
gi|8778219|gb|AAF79228.1|AC006917_13 F10B6.34
[Arabidopsis thaliana] gi|16648834|gb|AAL25607.1|
At1g14920/F10B6_15 [Arabidopsis thaliana]
gi|22655348|gb|AAM98266.1| At1g14920/F10B6_15
[Arabidopsis thaliana]
Length = 533
Score = 207 bits (528), Expect = 1e-52
Identities = 97/126 (76%), Positives = 111/126 (87%)
Frame = -3
Query: 896 FLDRFTESLHYYSALFDSLEGSSAVESQDKAMTEIYLGKQICNVVACEGSDRIERHETLT 717
FLDRFTESLHYYS LFDSLEG + QDK M+E+YLGKQICNVVAC+G DR+ERHETL+
Sbjct: 410 FLDRFTESLHYYSTLFDSLEGVPS--GQDKVMSEVYLGKQICNVVACDGPDRVERHETLS 467
Query: 716 QWRTRFNSAGLSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSA 537
QWR RF SAG + H+GSNAFKQASMLLALF GG+GYRVEE++GCL LGWHTRPLIATSA
Sbjct: 468 QWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSA 527
Query: 536 WQLASN 519
W+L++N
Sbjct: 528 WKLSTN 533
>emb|CAA72178.1| RGA2 protein [Arabidopsis thaliana]
Length = 532
Score = 207 bits (528), Expect = 1e-52
Identities = 97/126 (76%), Positives = 111/126 (87%)
Frame = -3
Query: 896 FLDRFTESLHYYSALFDSLEGSSAVESQDKAMTEIYLGKQICNVVACEGSDRIERHETLT 717
FLDRFTESLHYYS LFDSLEG + QDK M+E+YLGKQICNVVAC+G DR+ERHETL+
Sbjct: 409 FLDRFTESLHYYSTLFDSLEGVPS--GQDKVMSEVYLGKQICNVVACDGPDRVERHETLS 466
Query: 716 QWRTRFNSAGLSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSA 537
QWR RF SAG + H+GSNAFKQASMLLALF GG+GYRVEE++GCL LGWHTRPLIATSA
Sbjct: 467 QWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSA 526
Query: 536 WQLASN 519
W+L++N
Sbjct: 527 WKLSTN 532
>emb|CAA75492.1| GAI [Arabidopsis thaliana]
Length = 532
Score = 207 bits (528), Expect = 1e-52
Identities = 97/126 (76%), Positives = 111/126 (87%)
Frame = -3
Query: 896 FLDRFTESLHYYSALFDSLEGSSAVESQDKAMTEIYLGKQICNVVACEGSDRIERHETLT 717
FLDRFTESLHYYS LFDSLEG + QDK M+E+YLGKQICNVVAC+G DR+ERHETL+
Sbjct: 409 FLDRFTESLHYYSTLFDSLEGVPS--GQDKVMSEVYLGKQICNVVACDGPDRVERHETLS 466
Query: 716 QWRTRFNSAGLSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIATSA 537
QWR RF SAG + H+GSNAFKQASMLLALF GG+GYRVEE++GCL LGWHTRPLIATSA
Sbjct: 467 QWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSA 526
Query: 536 WQLASN 519
W+L++N
Sbjct: 527 WKLSTN 532
>gb|AAO62757.1| GIA/RGA-like gibberellin response modulator [Gossypium hirsutum]
Length = 537
Score = 204 bits (519), Expect = 1e-51
Identities = 98/118 (83%), Positives = 106/118 (89%), Gaps = 1/118 (0%)
Frame = -3
Query: 896 FLDRFTESLHYYSALFDSLEGSS-AVESQDKAMTEIYLGKQICNVVACEGSDRIERHETL 720
FLDRFTE+LHYYS LFDSLEGS A SQD AM+E+YLG+QICNVVACEG DR+ERHE L
Sbjct: 411 FLDRFTEALHYYSTLFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGMDRVERHEPL 470
Query: 719 TQWRTRFNSAGLSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLTLGWHTRPLIA 546
TQWRTR +AG+SPVHLGSNA+KQASMLLALFA GDGYRVEENNGCL LGWHTRPLIA
Sbjct: 471 TQWRTRMETAGVSPVHLGSNAYKQASMLLALFASGDGYRVEENNGCLMLGWHTRPLIA 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 771,608,625
Number of Sequences: 1393205
Number of extensions: 17413382
Number of successful extensions: 59019
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 54448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58613
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 49333127949
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
