Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000097A_C01 KMC000097A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51507 WD40-repeat protein - Arabidopsis thaliana gi|975572... 75 6e-13
ref|NP_568338.1| WD40-repeat protein; protein id: At5g16750.1, s... 75 6e-13
gb|AAM53339.1| WD40-repeat protein [Arabidopsis thaliana] 60 2e-08
ref|NP_013323.1| part of small (ribosomal) subunit (SSU) process... 39 0.045
gb|AAO52228.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 38 0.10
>pir||T51507 WD40-repeat protein - Arabidopsis thaliana gi|9755727|emb|CAC01839.1|
WD40-repeat protein [Arabidopsis thaliana]
Length = 876
Score = 75.1 bits (183), Expect = 6e-13
Identities = 43/87 (49%), Positives = 55/87 (62%), Gaps = 4/87 (4%)
Frame = -1
Query: 568 PYSQRHFARIDRLVRSTFLLDYVLSGMSVIEPQTPQLESKALLSEIDIPDQENGVI---- 401
PYSQRHF+RIDR VRS+FLLDY L MSVI+P+T + E D +E VI
Sbjct: 782 PYSQRHFSRIDRFVRSSFLLDYTLGEMSVIDPETVETEYPK-----DEKKKEKDVIAAME 836
Query: 400 EEKDHTNENTTAKKRKSHKSKHGSHKK 320
++ D + T ++KRKS KSK S+KK
Sbjct: 837 QDTDELKQETPSRKRKSQKSKGKSNKK 863
>ref|NP_568338.1| WD40-repeat protein; protein id: At5g16750.1, supported by cDNA:
gi_15810484 [Arabidopsis thaliana]
gi|15810485|gb|AAL07130.1| putative WD40-repeat protein
[Arabidopsis thaliana] gi|21436311|gb|AAM51294.1|
putative WD40-repeat protein [Arabidopsis thaliana]
Length = 689
Score = 75.1 bits (183), Expect = 6e-13
Identities = 43/87 (49%), Positives = 55/87 (62%), Gaps = 4/87 (4%)
Frame = -1
Query: 568 PYSQRHFARIDRLVRSTFLLDYVLSGMSVIEPQTPQLESKALLSEIDIPDQENGVI---- 401
PYSQRHF+RIDR VRS+FLLDY L MSVI+P+T + E D +E VI
Sbjct: 595 PYSQRHFSRIDRFVRSSFLLDYTLGEMSVIDPETVETEYPK-----DEKKKEKDVIAAME 649
Query: 400 EEKDHTNENTTAKKRKSHKSKHGSHKK 320
++ D + T ++KRKS KSK S+KK
Sbjct: 650 QDTDELKQETPSRKRKSQKSKGKSNKK 676
>gb|AAM53339.1| WD40-repeat protein [Arabidopsis thaliana]
Length = 823
Score = 59.7 bits (143), Expect = 2e-08
Identities = 27/38 (71%), Positives = 32/38 (84%)
Frame = -1
Query: 568 PYSQRHFARIDRLVRSTFLLDYVLSGMSVIEPQTPQLE 455
PYSQRHF+RIDR VRS+FLLDY L MSVI+P+T + E
Sbjct: 782 PYSQRHFSRIDRFVRSSFLLDYTLGEMSVIDPETVETE 819
>ref|NP_013323.1| part of small (ribosomal) subunit (SSU) processosome (contains U3
snoRNA); Utp13p [Saccharomyces cerevisiae]
gi|1077378|pir||S51445 probable membrane protein YLR222c
- yeast (Saccharomyces cerevisiae)
gi|609371|gb|AAB67411.1| Ylr222cp [Saccharomyces
cerevisiae]
Length = 817
Score = 38.9 bits (89), Expect = 0.045
Identities = 15/27 (55%), Positives = 20/27 (73%)
Frame = -1
Query: 568 PYSQRHFARIDRLVRSTFLLDYVLSGM 488
PY+QRHF R+D LV +++LDY L M
Sbjct: 787 PYTQRHFTRVDNLVEQSYILDYALVEM 813
>gb|AAO52228.1| similar to Arabidopsis thaliana (Mouse-ear cress). WD40-repeat
protein [Dictyostelium discoideum]
Length = 902
Score = 37.7 bits (86), Expect = 0.10
Identities = 22/91 (24%), Positives = 41/91 (44%)
Frame = -1
Query: 568 PYSQRHFARIDRLVRSTFLLDYVLSGMSVIEPQTPQLESKALLSEIDIPDQENGVIEEKD 389
PY+ RHF RID++++ T+L+D+ + I P L + ++ + + D
Sbjct: 814 PYTDRHFQRIDKMLQKTYLIDFTIQS---INPAASTLS----MDRVETSHIDQNYKKSLD 866
Query: 388 HTNENTTAKKRKSHKSKHGSHKKAKDVAYNK 296
+ T +KS ++ KK K + K
Sbjct: 867 QLIKEPTKPMKKSIQTPTSQKKKEKKKTFFK 897
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,505,597
Number of Sequences: 1393205
Number of extensions: 9374981
Number of successful extensions: 24474
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 23112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24381
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
