Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000096A_C01 KMC000096A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC39055.1| putative protein [Oryza sativa] 106 2e-22
gb|AAO23083.1| unknown protein [Oryza sativa (japonica cultivar-... 105 5e-22
ref|NP_199127.1| putative protein; protein id: At5g43130.1 [Arab... 99 4e-20
ref|NP_174093.1| hypothetical protein; protein id: At1g27720.1 [... 83 3e-15
pir||A86402 protein T22C5.17 [imported] - Arabidopsis thaliana g... 83 3e-15
>emb|CAC39055.1| putative protein [Oryza sativa]
Length = 691
Score = 106 bits (265), Expect = 2e-22
Identities = 64/136 (47%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Frame = -1
Query: 623 TNAANVAARAAVGGDDVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLSRKSSPSSSGRS 444
T AANVAAR AVGG D+LSKWQ MAE A+QKRE G+D ++ SQ S +G+
Sbjct: 561 TTAANVAARQAVGGSDMLSKWQLMAEQARQKRE-GLDLAASSQ----RGTASRSHMAGKG 615
Query: 443 TKDNQERGKKGPTSTQTSGAARKFGRHN-ALAHPR-IARSISVKDAIAVLEREPQMSKSS 270
D+ E K+ ++ +G + GR A +HP+ R+IS+KD I VLEREPQM+KS
Sbjct: 616 PTDHHEASKRTHSAAFGTGGMNRQGRGPFAASHPKGPQRTISMKDVICVLEREPQMTKSR 675
Query: 269 LLYRLYEKIHSDASTE 222
L+YRLYE++ D++ +
Sbjct: 676 LIYRLYERLPGDSTRD 691
>gb|AAO23083.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 755
Score = 105 bits (262), Expect = 5e-22
Identities = 64/134 (47%), Positives = 82/134 (60%)
Frame = -1
Query: 623 TNAANVAARAAVGGDDVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLSRKSSPSSSGRS 444
T AAN AAR A GGDD+LS+WQ MAE K K +G D SSGS P L R SSP G+
Sbjct: 639 TTAANAAARVAAGGDDMLSRWQFMAEKKKSKCDG--DGSSGSMPGNMLPRTSSPKP-GKG 695
Query: 443 TKDNQERGKKGPTSTQTSGAARKFGRHNALAHPRIARSISVKDAIAVLEREPQMSKSSLL 264
+++ QE K G G R +H ++ RSI+VKD IA LEREPQM KSSLL
Sbjct: 696 SREQQEIEKTG-------GVRRS-------SHVKVTRSITVKDVIAALEREPQMLKSSLL 741
Query: 263 YRLYEKIHSDASTE 222
++LY + +++S +
Sbjct: 742 FQLYGRSPAESSAK 755
>ref|NP_199127.1| putative protein; protein id: At5g43130.1 [Arabidopsis thaliana]
gi|9757840|dbj|BAB08277.1|
gb|AAF24960.1~gene_id:MMG4.16~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 689
Score = 99.0 bits (245), Expect = 4e-20
Identities = 60/125 (48%), Positives = 81/125 (64%)
Frame = -1
Query: 623 TNAANVAARAAVGGDDVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLSRKSSPSSSGRS 444
T AANVAARAAVGGDD KWQ MAE A+QK S S+ KD ++K++ S G++
Sbjct: 579 TTAANVAARAAVGGDDAFLKWQLMAE-ARQK--------SVSEAGKDGNQKTT-SGGGKN 628
Query: 443 TKDNQERGKKGPTSTQTSGAARKFGRHNALAHPRIARSISVKDAIAVLEREPQMSKSSLL 264
+KD Q+ G++ +G R + P++ R+ISVKD +AVLEREPQMSKS+L+
Sbjct: 629 SKDRQDGGRR----FSGTGGRRVGKNQGSSLQPKVVRTISVKDVVAVLEREPQMSKSTLM 684
Query: 263 YRLYE 249
YRL +
Sbjct: 685 YRLIQ 689
>ref|NP_174093.1| hypothetical protein; protein id: At1g27720.1 [Arabidopsis
thaliana]
Length = 617
Score = 82.8 bits (203), Expect = 3e-15
Identities = 55/128 (42%), Positives = 72/128 (55%)
Frame = -1
Query: 617 AANVAARAAVGGDDVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLSRKSSPSSSGRSTK 438
AANVA RAAVGGDD SKW+ MAE +R+ S GR++K
Sbjct: 527 AANVAVRAAVGGDDRFSKWKLMAE----------------------ARQRSSPGPGRNSK 564
Query: 437 DNQERGKKGPTSTQTSGAARKFGRHNALAHPRIARSISVKDAIAVLEREPQMSKSSLLYR 258
+ SG + FG++ L P++ RSISVKD IAV+E+EPQMS+S+LLYR
Sbjct: 565 -------------KLSGGTQ-FGKNQGL--PKVVRSISVKDVIAVVEKEPQMSRSTLLYR 608
Query: 257 LYEKIHSD 234
+Y +I SD
Sbjct: 609 VYNRICSD 616
>pir||A86402 protein T22C5.17 [imported] - Arabidopsis thaliana
gi|6693034|gb|AAF24960.1|AC012375_23 T22C5.17
[Arabidopsis thaliana]
Length = 697
Score = 82.8 bits (203), Expect = 3e-15
Identities = 55/128 (42%), Positives = 72/128 (55%)
Frame = -1
Query: 617 AANVAARAAVGGDDVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLSRKSSPSSSGRSTK 438
AANVA RAAVGGDD SKW+ MAE +R+ S GR++K
Sbjct: 607 AANVAVRAAVGGDDRFSKWKLMAE----------------------ARQRSSPGPGRNSK 644
Query: 437 DNQERGKKGPTSTQTSGAARKFGRHNALAHPRIARSISVKDAIAVLEREPQMSKSSLLYR 258
+ SG + FG++ L P++ RSISVKD IAV+E+EPQMS+S+LLYR
Sbjct: 645 -------------KLSGGTQ-FGKNQGL--PKVVRSISVKDVIAVVEKEPQMSRSTLLYR 688
Query: 257 LYEKIHSD 234
+Y +I SD
Sbjct: 689 VYNRICSD 696
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,409,415
Number of Sequences: 1393205
Number of extensions: 9575603
Number of successful extensions: 33822
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 28061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31974
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
