Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000094A_C05 KMC000094A_c05
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174491.1| hypothetical protein; protein id: At1g32120.1 [... 57 2e-07
gb|AAD27628.1|AF128457_2 hypothetical protein [Oryza sativa subs... 47 1e-04
gb|AAD27684.1|AF119222_16 hypothetical protein [Oryza sativa] 47 1e-04
gb|AAD27637.1|AF128457_11 hypothetical protein [Oryza sativa sub... 47 1e-04
gb|AAD20312.1| hypothetical protein [Zea mays] 47 2e-04
>ref|NP_174491.1| hypothetical protein; protein id: At1g32120.1 [Arabidopsis thaliana]
gi|25518597|pir||E86445 hypothetical protein F3C3.9
[imported] - Arabidopsis thaliana
gi|10801373|gb|AAG23445.1|AC084165_11 hypothetical
protein [Arabidopsis thaliana]
Length = 1206
Score = 57.0 bits (136), Expect = 2e-07
Identities = 33/66 (50%), Positives = 43/66 (65%)
Frame = -1
Query: 246 EYLLLYFHSTTHKGLEGCNHILLV*LSS*YGCVILSSVVISLLPTRFSVDLCKCITTPSM 67
E LL +FHST+HKGLEG H+LLV L G ++SS+ ++ PT F VDLC I +M
Sbjct: 1078 ECLLFFFHSTSHKGLEGYYHLLLVFL---IGLCVISSIAGAICPTSFPVDLCNGI---AM 1131
Query: 66 TLLQLY 49
TL L+
Sbjct: 1132 TLQGLW 1137
>gb|AAD27628.1|AF128457_2 hypothetical protein [Oryza sativa subsp. indica]
Length = 309
Score = 47.4 bits (111), Expect = 1e-04
Identities = 25/53 (47%), Positives = 34/53 (63%)
Frame = -1
Query: 252 LCEYLLLYFHSTTHKGLEGCNHILLV*LSS*YGCVILSSVVISLLPTRFSVDL 94
+ E LL YFHSTTH+GLEG H LLV + + ++V+ +LLP F VD+
Sbjct: 139 MAELLLFYFHSTTHQGLEGYYHYLLVVV---VALCVATTVLGALLPASFPVDI 188
>gb|AAD27684.1|AF119222_16 hypothetical protein [Oryza sativa]
Length = 309
Score = 47.4 bits (111), Expect = 1e-04
Identities = 25/53 (47%), Positives = 34/53 (63%)
Frame = -1
Query: 252 LCEYLLLYFHSTTHKGLEGCNHILLV*LSS*YGCVILSSVVISLLPTRFSVDL 94
+ E LL YFHSTTH+GLEG H LLV + + ++V+ +LLP F VD+
Sbjct: 139 MAELLLFYFHSTTHQGLEGYYHYLLVVV---VALCVATTVLGALLPASFPVDI 188
>gb|AAD27637.1|AF128457_11 hypothetical protein [Oryza sativa subsp. indica]
Length = 379
Score = 47.4 bits (111), Expect = 1e-04
Identities = 25/53 (47%), Positives = 34/53 (63%)
Frame = -1
Query: 252 LCEYLLLYFHSTTHKGLEGCNHILLV*LSS*YGCVILSSVVISLLPTRFSVDL 94
+ E LL YFHSTTH+GLEG H LLV + + ++V+ +LLP F VD+
Sbjct: 209 MAELLLFYFHSTTHQGLEGYYHYLLVVV---VALCVATTVLGALLPASFPVDI 258
>gb|AAD20312.1| hypothetical protein [Zea mays]
Length = 296
Score = 47.0 bits (110), Expect = 2e-04
Identities = 26/51 (50%), Positives = 32/51 (61%)
Frame = -1
Query: 246 EYLLLYFHSTTHKGLEGCNHILLV*LSS*YGCVILSSVVISLLPTRFSVDL 94
E +L YFHSTTH GLEG H LLV L G + ++V+ +LLP F DL
Sbjct: 136 ELVLFYFHSTTHMGLEGYYHYLLVLL---VGLCVAAAVLGALLPDSFPADL 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,898,926
Number of Sequences: 1393205
Number of extensions: 11043687
Number of successful extensions: 26403
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26401
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
