Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000092A_C02 KMC000092A_c02
(743 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG21915.1|AC026815_19 putative ATP-dependent RNA helicase (5... 75 1e-12
gb|AAG16852.1|AC069145_1 putative ATP-dependent RNA helicase [Or... 75 1e-12
pir||F84774 probable ATP-dependent RNA helicase A [imported] - A... 71 2e-11
ref|NP_181136.2| putative ATP-dependent RNA helicase A; protein ... 71 2e-11
ref|NP_703313.1| hypothetical protein [Plasmodium falciparum 3D7... 39 0.10
>gb|AAG21915.1|AC026815_19 putative ATP-dependent RNA helicase (5'-partial) [Oryza sativa]
Length = 338
Score = 74.7 bits (182), Expect = 1e-12
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = -1
Query: 743 FSASKSVIELIKKLRGELDKLLNRKIVEPGLDVSGEGKGVVAAAVELLH 597
FSA + +IELI++LRGELDKLL RKI EP LD+ EGKGVVAAAVELLH
Sbjct: 284 FSAPRRIIELIQRLRGELDKLLQRKIEEPALDIFSEGKGVVAAAVELLH 332
>gb|AAG16852.1|AC069145_1 putative ATP-dependent RNA helicase [Oryza sativa]
Length = 869
Score = 74.7 bits (182), Expect = 1e-12
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = -1
Query: 743 FSASKSVIELIKKLRGELDKLLNRKIVEPGLDVSGEGKGVVAAAVELLH 597
FSA + +IELI++LRGELDKLL RKI EP LD+ EGKGVVAAAVELLH
Sbjct: 815 FSAPRRIIELIQRLRGELDKLLQRKIEEPALDIFSEGKGVVAAAVELLH 863
>pir||F84774 probable ATP-dependent RNA helicase A [imported] - Arabidopsis
thaliana gi|4510377|gb|AAD21465.1| putative ATP-dependent
RNA helicase A [Arabidopsis thaliana]
Length = 993
Score = 70.9 bits (172), Expect = 2e-11
Identities = 33/48 (68%), Positives = 44/48 (90%)
Frame = -1
Query: 743 FSASKSVIELIKKLRGELDKLLNRKIVEPGLDVSGEGKGVVAAAVELL 600
FSASK+++ELI++LRGE+DKLLN+KI +P LD++ EGKGVV+A VELL
Sbjct: 941 FSASKNILELIQRLRGEVDKLLNKKIEDPSLDITVEGKGVVSAVVELL 988
>ref|NP_181136.2| putative ATP-dependent RNA helicase A; protein id: At2g35920.1,
supported by cDNA: gi_17979399 [Arabidopsis thaliana]
Length = 995
Score = 70.9 bits (172), Expect = 2e-11
Identities = 33/48 (68%), Positives = 44/48 (90%)
Frame = -1
Query: 743 FSASKSVIELIKKLRGELDKLLNRKIVEPGLDVSGEGKGVVAAAVELL 600
FSASK+++ELI++LRGE+DKLLN+KI +P LD++ EGKGVV+A VELL
Sbjct: 943 FSASKNILELIQRLRGEVDKLLNKKIEDPSLDITVEGKGVVSAVVELL 990
>ref|NP_703313.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23510685|emb|CAD49070.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 826
Score = 38.5 bits (88), Expect = 0.10
Identities = 26/82 (31%), Positives = 39/82 (46%)
Frame = -3
Query: 279 FFFFFVWFHTERFVASMLYTCT*FIFHCCPVWFLARYCSFFGLVGFSFDR*DNSFFFLGY 100
FFF F++F F S + F+F P +F++ FF + FSF FFF+ +
Sbjct: 32 FFFHFLFFSFPFFFISFFFH---FLFFSFPFFFIS---FFFHFLFFSFP-----FFFISF 80
Query: 99 LFSLRVLSLAFFLDINRYSFIF 34
FS ++FF +SF F
Sbjct: 81 FFSFHFFFISFFFYFLFFSFHF 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 637,466,789
Number of Sequences: 1393205
Number of extensions: 14216775
Number of successful extensions: 39459
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 37075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39322
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
