Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000091A_C01 KMC000091A_c01
(753 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA09761.1| ebiP481 [Anopheles gambiae str. PEST] 34 2.6
ref|XP_221644.1| similar to chloride channel [Mus musculus] [Rat... 32 7.5
ref|NP_497809.1| Heavy chain, Unconventional Myosin IA HUM-5 (11... 32 7.5
emb|CAA93276.1| cysteine proteinase [Haemonchus contortus] 32 9.8
ref|NP_702477.1| hypothetical protein [Plasmodium falciparum 3D7... 32 9.8
>gb|EAA09761.1| ebiP481 [Anopheles gambiae str. PEST]
Length = 975
Score = 33.9 bits (76), Expect = 2.6
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Frame = -1
Query: 378 KRLSWEHVPEPVADTISNHICGMN------------HGDMQPEVEALTHYFSSLDTGGQS 235
K + EH P P+ DT+ N + G+N H ++ P+ +T + S G+
Sbjct: 472 KAIQREHYPLPIIDTLFNKLKGVNIFSKLDITSAYYHVELNPDSREITTFMS-----GKG 526
Query: 234 MVRRKLQLLFINCS 193
++R K + INC+
Sbjct: 527 LMRFKRLMFRINCA 540
>ref|XP_221644.1| similar to chloride channel [Mus musculus] [Rattus norvegicus]
Length = 898
Score = 32.3 bits (72), Expect = 7.5
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 357 HAPNSVSSRMDKXPHMKFFHNLQVHNRKAVHESLSTSNRIGRRTSFLYVQHQGAAG 524
HA + + RM HM+ ++ H H ++S + R+ ++ +H AAG
Sbjct: 695 HAYSDAAKRMKPTVHMRTHRYMRTHRYMRTHSNISAVTKNTRKVVMIHSEHTHAAG 750
>ref|NP_497809.1| Heavy chain, Unconventional Myosin IA HUM-5 (116.6 kD) (hum-5)
[Caenorhabditis elegans] gi|7511498|pir||T24349 myosin
IA - Caenorhabditis elegans gi|414640|emb|CAA53244.1|
myosin IA [Caenorhabditis elegans]
gi|3879326|emb|CAA84673.1| C. elegans HUM-5 protein
(corresponding sequence T02C12.1) [Caenorhabditis
elegans]
Length = 1017
Score = 32.3 bits (72), Expect = 7.5
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = -1
Query: 381 WKRLSWEHVPEPVADTISNHICGMNHGDMQPEVEALTHYFSSLDTGGQSMVRRKLQLLFI 202
+ +++++ +PV ISN++ + Q E E H F L GG + R+ L
Sbjct: 167 YMHINFDYDGDPVGGNISNYLLEKSRVVRQQEGERNFHVFYQLVNGGDDGLLRQFGLTKD 226
Query: 201 NCSYFYVNQSYFRK 160
Y+++NQ K
Sbjct: 227 AKQYYFLNQGQSHK 240
>emb|CAA93276.1| cysteine proteinase [Haemonchus contortus]
Length = 350
Score = 32.0 bits (71), Expect = 9.8
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = -1
Query: 507 AEHIRMKSYGRCDCLLRETHELPC-------GCELAGYERISYEAIYPFWKRLSWEHVPE 349
++ I +++ G+ +L +T L C GCE GY+ +++E + F + +
Sbjct: 132 SDRICVQTKGKLQTILSDTDILSCCGRMCGDGCE-GGYDHLAWEWVQRFGVVTGGPYQQK 190
Query: 348 PVADTISNHICGMNHG 301
V + H CG++HG
Sbjct: 191 GVCRPYAFHPCGLHHG 206
>ref|NP_702477.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497661|gb|AAN37201.1|AE014825_60 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2753
Score = 32.0 bits (71), Expect = 9.8
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 363 PNSVSSRMDKXPHMKFFHNLQVHNRKA-VHESLSTSNRIGRRTS-FLYVQHQ 512
PNS SS K + K+ HNL+ +NRK+ E ST N I TS LY+ ++
Sbjct: 671 PNS-SSNNHKKYNWKYLHNLEEYNRKSYCEEEKSTDNYIQHSTSDILYLDNK 721
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,452,067
Number of Sequences: 1393205
Number of extensions: 12952126
Number of successful extensions: 36732
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 35276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36712
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
