Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000090A_C01 KMC000090A_c01
(719 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_066533.1| NADH dehydrogenase subunit 2 [Naegleria gruberi... 33 5.2
ref|XP_232416.1| similar to tissue-type vomeronasal neurons puta... 32 6.8
>ref|NP_066533.1| NADH dehydrogenase subunit 2 [Naegleria gruberi]
gi|10444245|gb|AAG17811.1|AF288092_36 NADH dehydrogenase
subunit 2 [Naegleria gruberi]
Length = 492
Score = 32.7 bits (73), Expect = 5.2
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = +2
Query: 317 LFWGVTFVLY---VHLFFCPLSYI---LFLGSVQNLQAFLHHEGNDFNIYSFLKSLWLVH 478
LF+G T + Y ++LFF LS I ++L S+ N L G F +YSF W+
Sbjct: 181 LFYGFTGIFYYEDLNLFFLNLSNIDSNIYLNSIFNFSIALMLVGLLFKLYSFPFHFWVSD 240
Query: 479 QYLFTH*KSTSIFSLV 526
Y + T F+LV
Sbjct: 241 IYQGSTFVVTFFFALV 256
>ref|XP_232416.1| similar to tissue-type vomeronasal neurons putative pheromone
receptor V2R1 [Mus musculus] [Rattus norvegicus]
Length = 1348
Score = 32.3 bits (72), Expect = 6.8
Identities = 39/131 (29%), Positives = 61/131 (45%), Gaps = 15/131 (11%)
Frame = +2
Query: 356 FFCPLSYILFLGSVQNLQAFLHHEGND-FN-----IYSFLK--SLWL--VHQYLFTH*K- 502
F+C L Y+ FL S+ L AFL D FN +S L S+W+ V YL + K
Sbjct: 750 FYCVLGYLGFLASLSLLIAFLARRLPDTFNEAKTITFSMLVFCSVWISFVPTYLSSKGKT 809
Query: 503 --STSIFSLVVISSSQIAMIF*TDLSFAQNHVILILNYFLHAS--LTL*YHDKNLVKDSR 670
+ I S++ SS+ + IF + +VIL+ ++ H L + + +N+ KD
Sbjct: 810 MVAVEILSILASSSTLLGCIF-----LPKCYVILMRDFTKHYQHMLAMVFAIENINKDPN 864
Query: 671 IFIINKMNFXL 703
I + F L
Sbjct: 865 ILFNMSLGFYL 875
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,791,665
Number of Sequences: 1393205
Number of extensions: 10610892
Number of successful extensions: 19850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19849
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
