Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000088A_C02 KMC000088A_c02
(939 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179501.1| putative cadmium-transporting ATPase; protein i... 38 0.19
gb|AAL84162.1|AF412407_1 putative heavy metal transporter [Arabi... 38 0.19
pir||A56554 transcription factor C/EBP - African clawed frog gi|... 35 1.6
gb|EAA03222.1| agCP1893 [Anopheles gambiae str. PEST] 35 2.2
ref|NP_566467.2| myb family transcription factor; protein id: At... 34 2.8
>ref|NP_179501.1| putative cadmium-transporting ATPase; protein id: At2g19110.1,
supported by cDNA: gi_19071217, supported by cDNA:
gi_20466062 [Arabidopsis thaliana]
gi|12229637|sp|O64474|AHM2_ARATH Potential
cadmium/zinc-transporting ATPase 2
gi|25411904|pir||F84572 probable cadmium-transporting
ATPase [imported] - Arabidopsis thaliana
gi|4210504|gb|AAD12041.1| putative cadmium-transporting
ATPase [Arabidopsis thaliana] gi|11990207|emb|CAC19544.1|
putative heavy metal transporter [Arabidopsis thaliana]
gi|20466063|gb|AAM19954.1| At2g19110/T20K24.12
[Arabidopsis thaliana]
Length = 1172
Score = 38.1 bits (87), Expect = 0.19
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = -2
Query: 713 RTYNKSVENHRHRGHHHNHHHQLS 642
R+Y K + +HRH HHH+HHH +S
Sbjct: 1148 RSYAKELCSHRHHHHHHHHHHHVS 1171
>gb|AAL84162.1|AF412407_1 putative heavy metal transporter [Arabidopsis thaliana]
Length = 1172
Score = 38.1 bits (87), Expect = 0.19
Identities = 13/24 (54%), Positives = 18/24 (74%)
Frame = -2
Query: 713 RTYNKSVENHRHRGHHHNHHHQLS 642
R+Y K + +HRH HHH+HHH +S
Sbjct: 1148 RSYAKELCSHRHHHHHHHHHHHVS 1171
>pir||A56554 transcription factor C/EBP - African clawed frog
gi|255567|gb|AAB23276.1| CCAAT/enhancer core binding
protein; C/EBP [Xenopus laevis]
gi|27469852|gb|AAH41714.1| Similar to CCAAT/enhancer
binding protein (C/EBP), alpha [Xenopus laevis]
Length = 305
Score = 35.0 bits (79), Expect = 1.6
Identities = 16/35 (45%), Positives = 19/35 (53%)
Frame = -2
Query: 686 HRHRGHHHNHHHQLSILYYLLPYKSAYVKSSFSKG 582
H H HHH+HH Q S L + P S SS S+G
Sbjct: 185 HHHPAHHHHHHLQTSSLKGISPSSSTSSSSSESRG 219
>gb|EAA03222.1| agCP1893 [Anopheles gambiae str. PEST]
Length = 2517
Score = 34.7 bits (78), Expect = 2.2
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -2
Query: 686 HRHRGHHHNHHHQLSILYYLLPYKSAYVKSSFSKGSGADISLSLVSS 546
H H HHH HHH + LP A V S S G G+ S S S+
Sbjct: 2455 HPHHHHHHQHHH------HQLPPPQANVSSGGSSGGGSVASTSAGST 2495
>ref|NP_566467.2| myb family transcription factor; protein id: At3g13890.1, supported
by cDNA: gi_5823326 [Arabidopsis thaliana]
gi|5823327|gb|AAD53102.1|AF175997_1 putative
transcription factor [Arabidopsis thaliana]
Length = 367
Score = 34.3 bits (77), Expect = 2.8
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = -2
Query: 701 KSVENHRHRGHHHNHHHQLSILYYLLPYKSAYVKSSFSKGSGADISLSLVSSIIVPFSSS 522
K + +H H GHHH+H ++ L LPY + F+ + D S +S+II + +
Sbjct: 123 KKLMSHHHHGHHHHHLSSMASLLTNLPY-----HNGFNPTTVDDESSRFMSNIITNTNPN 177
Query: 521 HICSS 507
I S
Sbjct: 178 FITPS 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 803,361,991
Number of Sequences: 1393205
Number of extensions: 17539248
Number of successful extensions: 67520
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61085
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52414431048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
