Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000087A_C01 KMC000087A_c01
(1169 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL77005.1| aldehyde dehydrogenase [Allium cepa] 33 0.018
gb|AAK58370.1|AF269064_1 T-cytoplasm male sterility restorer fac... 31 0.099
pir||T03983 rf2 nuclear restorer protein - maize gi|1421730|gb|A... 30 0.21
dbj|BAB92019.1| mitochondrial aldehyde dehydrogenase [Sorghum bi... 30 0.21
gb|AAO72532.1| aldehyde dehydrogenase 1 precursor [Lotus cornicu... 30 0.21
>gb|AAL77005.1| aldehyde dehydrogenase [Allium cepa]
Length = 230
Score = 33.1 bits (74), Expect(2) = 0.018
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = -3
Query: 795 NAAITFVGYKMSGQGREK 742
+AAI F GYKMSGQGREK
Sbjct: 189 DAAIPFGGYKMSGQGREK 206
Score = 28.1 bits (61), Expect(2) = 0.018
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1
Query: 731 LQRKTVLTPLKNLAWL 684
LQ K V+TPLKN AWL
Sbjct: 215 LQTKAVVTPLKNPAWL 230
>gb|AAK58370.1|AF269064_1 T-cytoplasm male sterility restorer factor 2 [Zea mays]
Length = 549
Score = 31.2 bits (69), Expect(2) = 0.099
Identities = 14/18 (77%), Positives = 15/18 (82%)
Frame = -3
Query: 795 NAAITFVGYKMSGQGREK 742
+AAI F GYKMSG GREK
Sbjct: 508 DAAIPFGGYKMSGMGREK 525
Score = 27.3 bits (59), Expect(2) = 0.099
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = -1
Query: 731 LQRKTVLTPLKNLAWL 684
LQ K V+TP+KN AWL
Sbjct: 534 LQVKAVVTPIKNAAWL 549
>pir||T03983 rf2 nuclear restorer protein - maize gi|1421730|gb|AAC49371.1| RF2
gi|12004294|gb|AAG43988.1|AF215823_1 T cytoplasm male
sterility restorer factor 2 [Zea mays]
Length = 549
Score = 30.0 bits (66), Expect(2) = 0.21
Identities = 14/18 (77%), Positives = 15/18 (82%)
Frame = -3
Query: 795 NAAITFVGYKMSGQGREK 742
+AAI F GYKMSG GREK
Sbjct: 508 DAAIPFGGYKMSGIGREK 525
Score = 27.3 bits (59), Expect(2) = 0.21
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = -1
Query: 731 LQRKTVLTPLKNLAWL 684
LQ K V+TP+KN AWL
Sbjct: 534 LQVKAVVTPIKNAAWL 549
>dbj|BAB92019.1| mitochondrial aldehyde dehydrogenase [Sorghum bicolor]
Length = 547
Score = 30.0 bits (66), Expect(2) = 0.21
Identities = 14/18 (77%), Positives = 15/18 (82%)
Frame = -3
Query: 795 NAAITFVGYKMSGQGREK 742
+AAI F GYKMSG GREK
Sbjct: 506 DAAIPFGGYKMSGIGREK 523
Score = 27.3 bits (59), Expect(2) = 0.21
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = -1
Query: 731 LQRKTVLTPLKNLAWL 684
LQ K V+TP+KN AWL
Sbjct: 532 LQVKAVVTPIKNAAWL 547
>gb|AAO72532.1| aldehyde dehydrogenase 1 precursor [Lotus corniculatus]
Length = 542
Score = 30.0 bits (66), Expect(2) = 0.21
Identities = 14/18 (77%), Positives = 15/18 (82%)
Frame = -3
Query: 795 NAAITFVGYKMSGQGREK 742
+AAI F GYKMSG GREK
Sbjct: 501 DAAIPFGGYKMSGIGREK 518
Score = 27.3 bits (59), Expect(2) = 0.21
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1
Query: 731 LQRKTVLTPLKNLAWL 684
LQ K V+TPLKN AWL
Sbjct: 527 LQVKAVVTPLKNPAWL 542
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 905,722,819
Number of Sequences: 1393205
Number of extensions: 19024043
Number of successful extensions: 37329
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 35563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37301
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 72478196208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
