Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000085A_C02 KMC000085A_c02
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM97165.1| putative oxysterol binding protein [Oryza sativa ... 157 2e-48
gb|AAM98072.1| AT4g08180/T12G13_20 [Arabidopsis thaliana] 152 3e-45
ref|NP_180659.1| putative oxysterol-binding protein; protein id:... 148 4e-45
ref|NP_180660.1| putative oxysterol-binding protein; protein id:... 137 3e-42
ref|NP_192558.1| putative protein; protein id: At4g08180.1 [Arab... 142 3e-42
>gb|AAM97165.1| putative oxysterol binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 772
Score = 157 bits (396), Expect(2) = 2e-48
Identities = 78/90 (86%), Positives = 80/90 (88%)
Frame = -3
Query: 666 TRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQAR 487
TRYNFTRFAITLNELT GLKEKLPPTDSRLRPDQR LENGEYE AN+EKLRLEQRQRQAR
Sbjct: 659 TRYNFTRFAITLNELTAGLKEKLPPTDSRLRPDQRCLENGEYERANAEKLRLEQRQRQAR 718
Query: 486 KMQESGWKPRWFVKDKASGTYPLFRRVLGG 397
KMQESGWKPRWF KDKA+ TY R LGG
Sbjct: 719 KMQESGWKPRWFAKDKATDTY----RYLGG 744
Score = 58.2 bits (139), Expect(2) = 2e-48
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -1
Query: 422 RYLGGYWEARDEGKWDSCPDIFGQIPSD 339
RYLGGYWE+R++G W+ CPDIFGQ+P+D
Sbjct: 740 RYLGGYWESREKGSWEGCPDIFGQVPND 767
>gb|AAM98072.1| AT4g08180/T12G13_20 [Arabidopsis thaliana]
Length = 814
Score = 152 bits (384), Expect(2) = 3e-45
Identities = 70/81 (86%), Positives = 77/81 (94%)
Frame = -3
Query: 666 TRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQAR 487
T+YN TRFAITLNELTPGLKE+LPPTDSRLRPDQRYLENGE+EMAN+EKLRLEQRQRQAR
Sbjct: 701 TKYNLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEKLRLEQRQRQAR 760
Query: 486 KMQESGWKPRWFVKDKASGTY 424
KMQE GWKPRWF+K+K S +Y
Sbjct: 761 KMQERGWKPRWFMKEKGSESY 781
Score = 52.0 bits (123), Expect(2) = 3e-45
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1
Query: 422 RYLGGYWEARDEGKWDSCPDIFGQIPSD 339
RY GGYWEAR++G W CPDIFG I SD
Sbjct: 782 RYKGGYWEAREDGSWVDCPDIFGHIDSD 809
>ref|NP_180659.1| putative oxysterol-binding protein; protein id: At2g31020.1
[Arabidopsis thaliana] gi|25295692|pir||E84715 probable
oxysterol-binding protein [imported] - Arabidopsis
thaliana gi|3201627|gb|AAC20736.1| putative
oxysterol-binding protein [Arabidopsis thaliana]
Length = 760
Score = 148 bits (373), Expect(2) = 4e-45
Identities = 71/90 (78%), Positives = 77/90 (84%)
Frame = -3
Query: 666 TRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQAR 487
T+YN TRF ITLNELTPGLKEKLPPTDSRLRPDQRYLE GEYEM N+EKLRLEQRQRQAR
Sbjct: 650 TKYNLTRFGITLNELTPGLKEKLPPTDSRLRPDQRYLEKGEYEMGNAEKLRLEQRQRQAR 709
Query: 486 KMQESGWKPRWFVKDKASGTYPLFRRVLGG 397
+MQE GWKP+WF K+K S TY R +GG
Sbjct: 710 EMQERGWKPKWFRKEKGSETY----RYIGG 735
Score = 55.8 bits (133), Expect(2) = 4e-45
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1
Query: 422 RYLGGYWEARDEGKWDSCPDIFGQI 348
RY+GGYWEARD G WD CPDIFGQ+
Sbjct: 731 RYIGGYWEARDSGSWDDCPDIFGQV 755
>ref|NP_180660.1| putative oxysterol-binding protein; protein id: At2g31030.1
[Arabidopsis thaliana] gi|25408121|pir||F84715 probable
oxysterol-binding protein [imported] - Arabidopsis
thaliana gi|20197221|gb|AAM14977.1| putative
oxysterol-binding protein [Arabidopsis thaliana]
Length = 489
Score = 137 bits (346), Expect(2) = 3e-42
Identities = 67/90 (74%), Positives = 72/90 (79%)
Frame = -3
Query: 666 TRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQAR 487
T+YN TRF ITLNELTP LKE LPPTDSRLRPDQRYLE GE+EM N EKLRLEQRQRQAR
Sbjct: 383 TKYNLTRFGITLNELTPDLKEMLPPTDSRLRPDQRYLEKGEFEMGNREKLRLEQRQRQAR 442
Query: 486 KMQESGWKPRWFVKDKASGTYPLFRRVLGG 397
+ QE GWKP WF K+K S TY R +GG
Sbjct: 443 EKQERGWKPTWFSKEKGSETY----RYIGG 468
Score = 56.6 bits (135), Expect(2) = 3e-42
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = -1
Query: 422 RYLGGYWEARDEGKWDSCPDIFGQI 348
RY+GGYWEARD G+WD CPDIFGQ+
Sbjct: 464 RYIGGYWEARDSGRWDDCPDIFGQV 488
>ref|NP_192558.1| putative protein; protein id: At4g08180.1 [Arabidopsis thaliana]
gi|7486872|pir||T10545 hypothetical protein T12G13.20 -
Arabidopsis thaliana gi|5262191|emb|CAB45788.1| putative
protein [Arabidopsis thaliana]
gi|7267458|emb|CAB81154.1| putative protein [Arabidopsis
thaliana]
Length = 830
Score = 142 bits (357), Expect(2) = 3e-42
Identities = 70/97 (72%), Positives = 77/97 (79%), Gaps = 16/97 (16%)
Frame = -3
Query: 666 TRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQ---- 499
T+YN TRFAITLNELTPGLKE+LPPTDSRLRPDQRYLENGE+EMAN+EKLRLEQRQ
Sbjct: 701 TKYNLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEKLRLEQRQRQNE 760
Query: 498 ------------RQARKMQESGWKPRWFVKDKASGTY 424
RQARKMQE GWKPRWF+K+K S +Y
Sbjct: 761 LELTCYKLGCVMRQARKMQERGWKPRWFMKEKGSESY 797
Score = 52.0 bits (123), Expect(2) = 3e-42
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -1
Query: 422 RYLGGYWEARDEGKWDSCPDIFGQIPSD 339
RY GGYWEAR++G W CPDIFG I SD
Sbjct: 798 RYKGGYWEAREDGSWVDCPDIFGHIDSD 825
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,569,190
Number of Sequences: 1393205
Number of extensions: 13490690
Number of successful extensions: 33062
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 31946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32988
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
