Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000084A_C01 KMC000084A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_596602.1| SNF2 family dna repair protein by similarity [S... 72 3e-12
dbj|BAB11535.1| helicase-like transcription factor-like protein ... 72 3e-12
ref|NP_196132.2| helicase-like transcription factor-like protein... 72 3e-12
dbj|BAC16482.1| helicase-like transcription factor-like protein ... 66 2e-10
ref|NP_594246.1| helicase; putative DNA repair protein [Schizosa... 65 4e-10
>ref|NP_596602.1| SNF2 family dna repair protein by similarity [Schizosaccharomyces
pombe] gi|7492644|pir||T39936 probable helicase - fission
yeast (Schizosaccharomyces pombe)
gi|3116120|emb|CAA18870.1| zinc finger protein; zf-C3HC4
type (RING finger); SNF2 family helicase; DEAD box
helicase; putative DNA repair protein
[Schizosaccharomyces pombe]
Length = 1040
Score = 72.4 bits (176), Expect = 3e-12
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Frame = -2
Query: 466 NFSCDLTAASRIYLMEPYLSPEIEARMIDLVHRIGPDQIVNVVKLIMHNSIEEKILELQD 287
N +LT A+ + +++P+ +P IE + +D HRIG D+ VN+++++ +N+IEE++L LQD
Sbjct: 946 NVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQD 1005
Query: 286 IKREREREAFDVNG----NRINQDDLEFIMG 206
KRE A G +R+N +L F+ G
Sbjct: 1006 RKRELIDSALGEKGLREISRLNTKELSFLFG 1036
>dbj|BAB11535.1| helicase-like transcription factor-like protein [Arabidopsis
thaliana]
Length = 881
Score = 72.0 bits (175), Expect = 3e-12
Identities = 38/90 (42%), Positives = 57/90 (63%)
Frame = -2
Query: 454 DLTAASRIYLMEPYLSPEIEARMIDLVHRIGPDQIVNVVKLIMHNSIEEKILELQDIKRE 275
+LTAASR+YL +P+ +P +E + +D +HRIG Q V ++++I NSIEE++LELQ K+
Sbjct: 794 NLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKN 853
Query: 274 REREAFDVNGNRINQDDLEFIMGAVVCTSS 185
EAF R +D+ E + VV S
Sbjct: 854 LANEAFK---RRQKKDEREVNVEDVVALMS 880
>ref|NP_196132.2| helicase-like transcription factor-like protein; protein id:
At5g05130.1, supported by cDNA: gi_20260623 [Arabidopsis
thaliana] gi|20260624|gb|AAM13210.1| helicase-like
transcription factor-like protein [Arabidopsis thaliana]
Length = 862
Score = 72.0 bits (175), Expect = 3e-12
Identities = 38/90 (42%), Positives = 57/90 (63%)
Frame = -2
Query: 454 DLTAASRIYLMEPYLSPEIEARMIDLVHRIGPDQIVNVVKLIMHNSIEEKILELQDIKRE 275
+LTAASR+YL +P+ +P +E + +D +HRIG Q V ++++I NSIEE++LELQ K+
Sbjct: 775 NLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKN 834
Query: 274 REREAFDVNGNRINQDDLEFIMGAVVCTSS 185
EAF R +D+ E + VV S
Sbjct: 835 LANEAFK---RRQKKDEREVNVEDVVALMS 861
>dbj|BAC16482.1| helicase-like transcription factor-like protein [Oryza sativa
(japonica cultivar-group)] gi|23495715|dbj|BAC19927.1|
helicase-like transcription factor-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 821
Score = 65.9 bits (159), Expect = 2e-10
Identities = 36/88 (40%), Positives = 57/88 (63%), Gaps = 5/88 (5%)
Frame = -2
Query: 454 DLTAASRIYLMEPYLSPEIEARMIDLVHRIGPDQIVNVVKLIMHNSIEEKILELQDIKRE 275
+LTAAS +YL +P+ +P +E + +D VHRIG + V VV+LI+ +SIEE++LELQ+ K++
Sbjct: 732 NLTAASTVYLFDPWWNPGVEEQAMDRVHRIGQTKEVKVVRLIVKDSIEERMLELQERKKK 791
Query: 274 REREAF-----DVNGNRINQDDLEFIMG 206
AF I ++L+ +MG
Sbjct: 792 LISGAFGRKKGGKEHKEIRVEELQMMMG 819
>ref|NP_594246.1| helicase; putative DNA repair protein [Schizosaccharomyces pombe]
gi|7492537|pir||T37813 probable DNA repair protein -
fission yeast (Schizosaccharomyces pombe)
gi|2414584|emb|CAB16565.1| helicase; putative DNA repair
protein [Schizosaccharomyces pombe]
Length = 897
Score = 65.1 bits (157), Expect = 4e-10
Identities = 33/87 (37%), Positives = 56/87 (63%), Gaps = 4/87 (4%)
Frame = -2
Query: 454 DLTAASRIYLMEPYLSPEIEARMIDLVHRIGPDQIVNVVKLIMHNSIEEKILELQDIKRE 275
+LT A+ + L EP+ +P IE + ID VHR+G + V V + I ++IEE+I+ +Q KR+
Sbjct: 808 NLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKRQ 867
Query: 274 REREAFDVNGN----RINQDDLEFIMG 206
+EA D N N R+++++L ++ G
Sbjct: 868 LVKEALDSNENNPLSRLDKEELLYLFG 894
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,605,625
Number of Sequences: 1393205
Number of extensions: 7125950
Number of successful extensions: 19581
Number of sequences better than 10.0: 446
Number of HSP's better than 10.0 without gapping: 19039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19571
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
