Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000082A_C05 KMC000082A_c05
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN60990.1| Putative Nonclathrin coat protein gamma - like pr... 180 2e-44
ref|NP_195171.1| Nonclathrin coat protein gamma - like protein; ... 163 2e-39
ref|NP_179216.1| unknown protein; protein id: At2g16200.1 [Arabi... 94 1e-18
gb|AAF05718.1|AF191562_1 coatomer protein gamma2-COP [Danio rerio] 88 1e-16
ref|NP_571069.1| coatomer protein complex, subunit gamma 2; gamm... 88 1e-16
>gb|AAN60990.1| Putative Nonclathrin coat protein gamma - like protein [Oryza sativa
(japonica cultivar-group)]
Length = 826
Score = 180 bits (456), Expect = 2e-44
Identities = 87/108 (80%), Positives = 97/108 (89%)
Frame = -1
Query: 677 NFRNAWESMGPDCERVDEYGLGARESLAEAVNTVINLLGLQPCEGTEAVPPNSRSHTCLL 498
NFRNAWE+M P+ ERVDEYGLG RESLAEAV+ VI++LG+QPCEGTE VP N+RSHTCLL
Sbjct: 719 NFRNAWENMDPESERVDEYGLGVRESLAEAVSAVISILGMQPCEGTEVVPKNARSHTCLL 778
Query: 497 SGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSDDETVSDAIHEIVASG 354
SGVFIG+ KVLVRLSFGL GPK+VAMKL+VRSDD VSD IHEIVASG
Sbjct: 779 SGVFIGDAKVLVRLSFGLSGPKEVAMKLAVRSDDPEVSDKIHEIVASG 826
>ref|NP_195171.1| Nonclathrin coat protein gamma - like protein; protein id:
At4g34450.1 [Arabidopsis thaliana] gi|7484873|pir||T05265
coat protein gamma-COP homolog T4L20.30 - Arabidopsis
thaliana gi|3641837|emb|CAA18824.1| Nonclathrin coat
protein gamma-like protein [Arabidopsis thaliana]
gi|7270395|emb|CAB80162.1| Nonclathrin coat protein
gamma-like protein [Arabidopsis thaliana]
Length = 831
Score = 163 bits (413), Expect = 2e-39
Identities = 78/108 (72%), Positives = 93/108 (85%)
Frame = -1
Query: 677 NFRNAWESMGPDCERVDEYGLGARESLAEAVNTVINLLGLQPCEGTEAVPPNSRSHTCLL 498
NFRNAWESM + ERVDEYGLG RESL EAV V++LLG+Q CEGTE +P N+RSHTCLL
Sbjct: 724 NFRNAWESMDEEDERVDEYGLGQRESLGEAVKAVMDLLGMQTCEGTETIPLNARSHTCLL 783
Query: 497 SGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSDDETVSDAIHEIVASG 354
SGV+IGNVKVLVR FG+D KD+AMKL+VR++D +V++AIHEIVASG
Sbjct: 784 SGVYIGNVKVLVRAQFGMDSSKDIAMKLTVRAEDVSVAEAIHEIVASG 831
>ref|NP_179216.1| unknown protein; protein id: At2g16200.1 [Arabidopsis thaliana]
gi|25411700|pir||G84537 hypothetical protein At2g16200
[imported] - Arabidopsis thaliana
gi|4678215|gb|AAD26961.1| unknown protein [Arabidopsis
thaliana]
Length = 69
Score = 94.4 bits (233), Expect = 1e-18
Identities = 42/69 (60%), Positives = 57/69 (81%)
Frame = -1
Query: 560 LQPCEGTEAVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSDDETVSD 381
+Q C+GTE V N+RSHTCL SG++IGNVKVLV+ FG+D K++ MKL+VR++D +VSD
Sbjct: 1 MQSCKGTETVASNARSHTCLPSGLYIGNVKVLVKAQFGMDSSKEIVMKLAVRAEDPSVSD 60
Query: 380 AIHEIVASG 354
AIH +VA+G
Sbjct: 61 AIHALVANG 69
>gb|AAF05718.1|AF191562_1 coatomer protein gamma2-COP [Danio rerio]
Length = 410
Score = 87.8 bits (216), Expect = 1e-16
Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = -1
Query: 677 NFRNAWESMGPDCERVDEYGLGARESLAEAVNTVINLLGLQPCEGTEAVPPNSRSHTCLL 498
NF AW+ +G +CE+ + + L +L EAVN +++ LG+QPCE ++ VP N SH L
Sbjct: 307 NFAAAWDEVGDECEKEETFALATVRTLDEAVNNIVSFLGMQPCERSDKVPENKNSHVLFL 366
Query: 497 SGVFIGNVKVLVRLSFGL-DGPKDVAMKLSVRSDDETVSDAI 375
+GVF G VLVR L DG V M+++VRS D+ V D I
Sbjct: 367 AGVFRGGHDVLVRARLALADG---VTMQVTVRSTDDNVVDVI 405
>ref|NP_571069.1| coatomer protein complex, subunit gamma 2; gamma-cop; gamma2-cop
[Danio rerio] gi|6179934|gb|AAF05717.1|AF191561_1
coatomer protein gamma2-COP [Danio rerio]
Length = 873
Score = 87.8 bits (216), Expect = 1e-16
Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = -1
Query: 677 NFRNAWESMGPDCERVDEYGLGARESLAEAVNTVINLLGLQPCEGTEAVPPNSRSHTCLL 498
NF AW+ +G +CE+ + + L +L EAVN +++ LG+QPCE ++ VP N SH L
Sbjct: 770 NFAAAWDEVGDECEKEETFALATVRTLDEAVNNIVSFLGMQPCERSDKVPENKNSHVLFL 829
Query: 497 SGVFIGNVKVLVRLSFGL-DGPKDVAMKLSVRSDDETVSDAI 375
+GVF G VLVR L DG V M+++VRS D+ V D I
Sbjct: 830 AGVFRGGHDVLVRARLALADG---VTMQVTVRSTDDNVVDVI 868
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 609,606,337
Number of Sequences: 1393205
Number of extensions: 13276956
Number of successful extensions: 28880
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 27716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28843
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
