Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000079A_C01 KMC000079A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK54090.1|AF362371_1 histidine kinase DhkI [Dictyostelium di... 38 0.10
gb|AAO51038.1| similar to Dictyostelium discoideum (Slime mold).... 38 0.10
gb|AAK54088.2|AF362369_1 histidine kinase DhkG [Dictyostelium di... 37 0.23
ref|NP_701149.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.40
ref|NP_704216.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.40
>gb|AAK54090.1|AF362371_1 histidine kinase DhkI [Dictyostelium discoideum]
Length = 1736
Score = 37.7 bits (86), Expect = 0.10
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 2/139 (1%)
Frame = +3
Query: 111 KLHDSQPQRNSKDYNDRKHHE*ETSE--LTQHLERISMWNTVINLQQLPRIHQHCKEHRN 284
K + + Q + K Y+ ++ + + + L Q R+S + ++ L IH H +
Sbjct: 1349 KQYSPKQQYSPKQYSPKQQQQQQQQQQQLEQLSGRMSPHKSNLSSTNLHHIHHHHIHQQQ 1408
Query: 285 RSIDNTTTKPPNKLLLENIAFQNKNETTNTHNDWIQINGFVFHSNNEEVNPSILDLSQNQ 464
N TT N L+L N N N N +N+ N NN N + + S N
Sbjct: 1409 SQQHNNTTVHSNNLILNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNTTNTSNNH 1462
Query: 465 ERHGIESRIFALSNTPPLN 521
+S +PP++
Sbjct: 1463 TSDPSKSSNSTPETSPPIS 1481
>gb|AAO51038.1| similar to Dictyostelium discoideum (Slime mold). Histidine kinase
DhkI
Length = 1736
Score = 37.7 bits (86), Expect = 0.10
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 2/139 (1%)
Frame = +3
Query: 111 KLHDSQPQRNSKDYNDRKHHE*ETSE--LTQHLERISMWNTVINLQQLPRIHQHCKEHRN 284
K + + Q + K Y+ ++ + + + L Q R+S + ++ L IH H +
Sbjct: 1349 KQYSPKQQYSPKQYSPKQQQQQQQQQQQLEQLSGRMSPHKSNLSSTNLHHIHHHHIHQQQ 1408
Query: 285 RSIDNTTTKPPNKLLLENIAFQNKNETTNTHNDWIQINGFVFHSNNEEVNPSILDLSQNQ 464
N TT N L+L N N N N +N+ N NN N + + S N
Sbjct: 1409 SQQHNNTTVHSNNLILNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNTTNTSNNH 1462
Query: 465 ERHGIESRIFALSNTPPLN 521
+S +PP++
Sbjct: 1463 TSDPSKSSNSTPETSPPIS 1481
>gb|AAK54088.2|AF362369_1 histidine kinase DhkG [Dictyostelium discoideum]
Length = 3432
Score = 36.6 bits (83), Expect = 0.23
Identities = 38/145 (26%), Positives = 61/145 (41%), Gaps = 6/145 (4%)
Frame = +3
Query: 99 KRKWKLHDSQPQRNSKDY--NDRKHHE*ETSELTQHLERISMWNTVINLQQLPRIHQHCK 272
+ + KL+D QPQ+ + N K + +TS+L IS N+ + LP I
Sbjct: 117 RSRLKLYDDQPQQQQQQQASNKSKLSQKQTSQLN-----ISGNNSGNSTPPLPTI----- 166
Query: 273 EHRNRSIDNTTTKPPNKLLLENIAFQ----NKNETTNTHNDWIQINGFVFHSNNEEVNPS 440
+ N SI+ + PP LL+ N N N +N+ N ++NN N +
Sbjct: 167 SNSNNSINFIHSPPPTPPLLKTPILSSHNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 226
Query: 441 ILDLSQNQERHGIESRIFALSNTPP 515
+ + N H I + L + PP
Sbjct: 227 NNNNNNNNNNHNINTIDIDLVSPPP 251
>ref|NP_701149.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496214|gb|AAN35873.1|AE014840_21 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1420
Score = 35.8 bits (81), Expect = 0.40
Identities = 26/102 (25%), Positives = 46/102 (44%), Gaps = 8/102 (7%)
Frame = +3
Query: 270 KEHRNRSIDNTTTKPPNKLLL--------ENIAFQNKNETTNTHNDWIQINGFVFHSNNE 425
K+ ++ I + PN+ LL +NI NKN T NT+N+ N +H +NE
Sbjct: 1283 KQQNDQDIKHIPINDPNQNLLNNFNKQYDDNILSNNKNTTYNTNNEH---NTNQYHQDNE 1339
Query: 426 EVNPSILDLSQNQERHGIESRIFALSNTPPLNKIEFLTXHKD 551
+ S ++++N E I P +++ F +K+
Sbjct: 1340 NHHMSKENINENITSKKEEQNIIDSYTIPSMDRYNFQQTYKN 1381
>ref|NP_704216.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498954|emb|CAD51032.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2569
Score = 35.8 bits (81), Expect = 0.40
Identities = 35/136 (25%), Positives = 59/136 (42%)
Frame = +3
Query: 27 ISQMYSNLNTRMLDPEYK*VSQK*KRKWKLHDSQPQRNSKDYNDRKHHE*ETSELTQHLE 206
+S+M N+NT + EY ++ W+ + RN+K+ D+ E + +
Sbjct: 1360 MSKMDENINTN--EREYNFKKKQIIGMWENFSNYEFRNNKEITDK-----EINYMNSFKN 1412
Query: 207 RISMWNTVINLQQLPRIHQHCKEHRNRSIDNTTTKPPNKLLLENIAFQNKNETTNTHNDW 386
R+ + I ++ RI++ KE +N D TTT N N N N N +N+
Sbjct: 1413 RLGELDEKIRNRK--RIYEERKEIQN---DTTTTTTTNNNNNNNNNNNNNNNNNNINNNN 1467
Query: 387 IQINGFVFHSNNEEVN 434
I N ++NN N
Sbjct: 1468 INNNNINNNNNNNNNN 1483
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,510,644
Number of Sequences: 1393205
Number of extensions: 11844949
Number of successful extensions: 38019
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 35414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37755
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
