Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000078A_C01 KMC000078A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06576 probable protein kinase TCTR2 - tomato gi|3201541|em... 88 6e-17
emb|CAC67797.1| TCTR2 protein [Lycopersicon esculentum] 88 6e-17
gb|AAG31141.1|AF305911_1 EDR1 [Oryza sativa] 84 1e-15
gb|AAG31142.1|AF305912_1 EDR1 [Hordeum vulgare] 63 3e-09
ref|NP_563824.1| putative protein kinase; protein id: At1g08720.... 56 2e-07
>pir||T06576 probable protein kinase TCTR2 - tomato gi|3201541|emb|CAA06334.1|
TCTR2 protein [Lycopersicon esculentum]
Length = 982
Score = 88.2 bits (217), Expect = 6e-17
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = -1
Query: 539 RIIWECCQQDPNLRPSFAQLTVALKPLQRLVIPSHQDQVAPPLPQEISVNSTP 381
RIIWEC Q DPNLRPSFAQLTVAL PLQRLVIP++ DQ+ LPQEISVNSTP
Sbjct: 930 RIIWECWQTDPNLRPSFAQLTVALTPLQRLVIPAYVDQLNSRLPQEISVNSTP 982
>emb|CAC67797.1| TCTR2 protein [Lycopersicon esculentum]
Length = 982
Score = 88.2 bits (217), Expect = 6e-17
Identities = 43/53 (81%), Positives = 46/53 (86%)
Frame = -1
Query: 539 RIIWECCQQDPNLRPSFAQLTVALKPLQRLVIPSHQDQVAPPLPQEISVNSTP 381
RIIWEC Q DPNLRPSFAQLTVAL PLQRLVIP++ DQ+ LPQEISVNSTP
Sbjct: 930 RIIWECWQTDPNLRPSFAQLTVALTPLQRLVIPAYVDQLNSRLPQEISVNSTP 982
>gb|AAG31141.1|AF305911_1 EDR1 [Oryza sativa]
Length = 903
Score = 84.0 bits (206), Expect = 1e-15
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = -1
Query: 539 RIIWECCQQDPNLRPSFAQLTVALKPLQRLVIPSHQDQVAPPLPQEISVNST 384
RIIWEC Q+DPNLRPSFAQLT ALK +QRLV PSHQ+ +PP+PQEI VNS+
Sbjct: 850 RIIWECWQKDPNLRPSFAQLTSALKTVQRLVTPSHQESQSPPVPQEIWVNSS 901
>gb|AAG31142.1|AF305912_1 EDR1 [Hordeum vulgare]
Length = 957
Score = 62.8 bits (151), Expect = 3e-09
Identities = 31/48 (64%), Positives = 37/48 (76%)
Frame = -1
Query: 536 IIWECCQQDPNLRPSFAQLTVALKPLQRLVIPSHQDQVAPPLPQEISV 393
II +C Q+DPNLRPSF QLT LK LQRLVIPSHQ+ + +P EIS+
Sbjct: 908 IIRDCWQKDPNLRPSFIQLTSYLKTLQRLVIPSHQETASNHVPYEISL 955
>ref|NP_563824.1| putative protein kinase; protein id: At1g08720.1, supported by cDNA:
gi_11127924 [Arabidopsis thaliana]
gi|11127925|gb|AAG31143.1|AF305913_1 EDR1 [Arabidopsis
thaliana]
Length = 933
Score = 56.2 bits (134), Expect = 2e-07
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = -1
Query: 539 RIIWECCQQDPNLRPSFAQLTVALKPLQRLVIPSHQ 432
RII EC Q DPNLRPSFAQLT LKPL RLV+P+ Q
Sbjct: 898 RIILECWQTDPNLRPSFAQLTEVLKPLNRLVLPTPQ 933
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,591,304
Number of Sequences: 1393205
Number of extensions: 9865727
Number of successful extensions: 24919
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 24103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24911
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
